Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0379 ATGAGAGTCTTACCTCCGGTTAAGAGCTTCCAACCAGGGGACATCACTATCAAATCACAATGTGAATGTGCTATCTGTGTAGAAGAGTTCAAGAATGGGGAGCTGATTCAACCTTTTGGAGTGTGTGTTCATGTCTTCCATTGCTACTGCATCAACTCTTGGTTGCACCGTGGAGAAACCACTTGTCCGGTTTGCCGTCACAATTTGTCAATTGATTATATTTGCTAG 228 0.4342 MRVLPPVKSFQPGDITIKSQCECAICVEEFKNGELIQPFGVCVHVFHCYCINSWLHRGETTCPVCRHNLSIDYIC* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0379 75 Pfam Ring finger domain 22 66 IPR001841 -
Lja3g0379 75 PANTHER OS06G0666500 PROTEIN 2 69 - -
Lja3g0379 75 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 69 - -
Lja3g0379 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 72 IPR013083 -
Lja3g0379 75 ProSiteProfiles Zinc finger RING-type profile. 23 66 IPR001841 -
Lja3g0379 75 SUPERFAMILY RING/U-box 17 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0379 Lja-Chr3 3856371 3856598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0379 18 70 Rapid Response to Elicitors AT3G05200 49.057 2.68e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0379 - K10664 aprc:113865236 110.538