Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0378 ATGAGAGCCTTACCCCCAGTTAAGAGCTTCCAACAAGAGGATATAGCAACCGGATCACAATGTGAATGTGTTATCTGCATGGAAGAGTTCAAGAATGGGGAGCTGATTCAACCTTTTGGAGTCTGTGTCCATGTCTTCCATTCCTCTTGTCTCAACTCTTGGTTGCATGGTGGGAAAATTACCTGTCCGGTTTGCCGTGAGTATTTGTCAATTGATATTTGCTAG 225 0.44 MRALPPVKSFQQEDIATGSQCECVICMEEFKNGELIQPFGVCVHVFHSSCLNSWLHGGKITCPVCREYLSIDIC* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0378 74 Pfam Ring finger domain 22 66 IPR001841 -
Lja3g0378 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 72 IPR013083 -
Lja3g0378 74 SUPERFAMILY RING/U-box 22 71 - -
Lja3g0378 74 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 69 - -
Lja3g0378 74 ProSiteProfiles Zinc finger RING-type profile. 23 66 IPR001841 -
Lja3g0378 74 PANTHER OS06G0666500 PROTEIN 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0378 Lja-Chr3 3853835 3854059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0378 9 70 Rapid Response to Elicitors AT3G05200 37.879 4.15e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0378 - - aprc:113865236 116.316