Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0376 ATGGACTGGCTGTCGTGCTTCGCATCTGCATTTGGAAAAGAGTTGGTATGCGGGGCAGTAGATGAATTACGTTATCCTTGCTGCTTCAACAAATTTGTGGAGGACCTTCAACATAAAGAAAACAATTTGATCACAACTATAAATAGCGTTGAAGACCGTGCTAAACATGCTAAGAAGCAATCAATGAAGACTGCTGATGTTTTGGATAAGTGGCTAAAGGAAGCTAACCCTCTCAAAGACAATGTGGAGGATCTACTGAAAGAAGCAAGAACAAGGAAGAGCAGCAATTGTCTTTGGCATTGTCCAAATTGGCTCTGGCGATACCGTTTAGGCAAGAAGTTAGCAAACAAAAAATATGACATTGAAAAATGTAATGAAGAAGGGATTAAGTGCATAGAACTTGAACGTGTTGCAACCCTTCCAAGCATGCCATATTTTTCTGGAGACAAATGTTTGGAATTTGATAGTAGAAAAGTTGCTTATCAGCAACTTATGGAGGCAGTAGAAGATGATGAGGTTTCCATGATTGGATTGTATGGTATGGGGGGTTGTGGTAAAACCACACTGGCAATGAAACTTATGAACACACAAAAACATCTGTTTGACAAAATGCTTTTTGTGCCTGTGTCTAGTGCACTAGATGTCCGGAGGATCCAAGATAAAATTGCAAGCTCGCTACAGTTTCAGTTTCCTGAAAGTGAAGAAAGGGAGAGAGCCCAACGCTTGCACACAAGGTTAATTCAAGAAAATAAGATTCTTTTGGTTCTAGATGATGTGTGGGAAATTCTTGATTTCGACACCATTGGGATCCCCACTAGTACAACTCATAAAGGATTCAAGGTTTTGATTACCACTCGGTTAGAATCAGTTTGTACTTCGATGGATTGTCAAAGAAAGATTTCACTGTCAATCTTAAAGAATGATGAAGCATGGGATCTTTTCCAAAAGCAAGCATGCTTGTCTGAAGTCACCTCCGAGTCCTTAAAGCATTTGGAAAGGCTAATTTCAGATGAATGTAAAGGACTACCTGTTGCTATTGCAGCTGTGGCCAGCACTTTGAAAGGAGAGTCCGAAGTAGAATGGAAGGTTGCATTGGATAGATTGCGAAATTCGAAGCCAGTGAATGTTGAAAAAGGTCTTCAAAATCCTTACAAGTGCTTGCAGTTGAGCTATGATAATTTGGATACTGAAGAAGCCAAGTCGCTTTTCTTGTTGTGCTCTGTGTACCCTGAAGACTATGAAATTTCAGTAGAGCAATTAACCAGATGTGCAATAGGGCTAGGCCTTGGTGGAGAAATTCACTCATATGAAGGGGCAAGGAATGAAATCAGTGCAACTAAAAATAAGCTCATAAGTTCTTGTTTACTATTAGCTGTTAAAGAGGAAGAGGAACATGTCAAGATGCATGACTTGGTTCGTGATGTTGCTCATTGGATTCCAAAGGAACAGTATAGGAATATGAACGGAAAATATTCACCAAGATACCTATGGACTGAGAATGTGCCATATGAACTGGATTTTTCCAATCTTGAATATCTACGAATACACACAGAATTGGAAATATCAGGTGAAGTAAGAAGGACATTGTCGACTATGTCATTCAAATCTTTGACAAACCTTCGATGTCTATTCCTCTTCCTCGGTTTGTGGGAATTAAGTGACTTTTCATTTTTAGGAGATATGAAGGAACTTGAAAGTCTTGATTTGTATTGTTGTTCATTCATTGAATTACCGAATGATGTTGCAGTTACACAACTGAAGAACTTGAGATTGTTAAGTTTAAGAATATGTGACATAGAAGAGAATAATTTTGAGGTTATTGCAAGACTCAAACTGTTGGAAGAATTGTACATTGTTGATGGGTCATTATGGAATCACTATAGTGAAAATGTTGCTGAATTCTTTAACAAGTTTAGTGTCGTCCAAGGGCTGAAAAGGTATATGATACGAGCAGGTACCATCCTATATCCTGGTTTCTTATTTGATGTGGACGTCGCTCCTTATCAGAAATGTATGGTGCTAGGTTATTATCATACATCATATGCAGCAGCAAAGGTTTTGGCCCAAAGAGCAGAGTGTTTGGTTTTAAGTCAGATATTGAGGGATGTGCTAAAAAATTTATGCCTGACATAA 2133 0.3863 MDWLSCFASAFGKELVCGAVDELRYPCCFNKFVEDLQHKENNLITTINSVEDRAKHAKKQSMKTADVLDKWLKEANPLKDNVEDLLKEARTRKSSNCLWHCPNWLWRYRLGKKLANKKYDIEKCNEEGIKCIELERVATLPSMPYFSGDKCLEFDSRKVAYQQLMEAVEDDEVSMIGLYGMGGCGKTTLAMKLMNTQKHLFDKMLFVPVSSALDVRRIQDKIASSLQFQFPESEERERAQRLHTRLIQENKILLVLDDVWEILDFDTIGIPTSTTHKGFKVLITTRLESVCTSMDCQRKISLSILKNDEAWDLFQKQACLSEVTSESLKHLERLISDECKGLPVAIAAVASTLKGESEVEWKVALDRLRNSKPVNVEKGLQNPYKCLQLSYDNLDTEEAKSLFLLCSVYPEDYEISVEQLTRCAIGLGLGGEIHSYEGARNEISATKNKLISSCLLLAVKEEEEHVKMHDLVRDVAHWIPKEQYRNMNGKYSPRYLWTENVPYELDFSNLEYLRIHTELEISGEVRRTLSTMSFKSLTNLRCLFLFLGLWELSDFSFLGDMKELESLDLYCCSFIELPNDVAVTQLKNLRLLSLRICDIEENNFEVIARLKLLEELYIVDGSLWNHYSENVAEFFNKFSVVQGLKRYMIRAGTILYPGFLFDVDVAPYQKCMVLGYYHTSYAAAKVLAQRAECLVLSQILRDVLKNLCLT* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0376 710 CDD AAA 160 285 - -
Lja3g0376 710 Gene3D - 139 301 IPR027417 -
Lja3g0376 710 Coils Coil 33 53 - -
Lja3g0376 710 Gene3D - 390 476 IPR036388 -
Lja3g0376 710 Coils Coil 68 88 - -
Lja3g0376 710 SUPERFAMILY L domain-like 467 627 - -
Lja3g0376 710 Gene3D Ribonuclease Inhibitor 477 645 IPR032675 -
Lja3g0376 710 PANTHER DISEASE RESISTANCE PROTEIN RP 57 629 IPR044974 GO:0006952
Lja3g0376 710 PANTHER DISEASE RESISTANCE PROTEIN RFL1-RELATED 57 629 - -
Lja3g0376 710 Pfam NB-ARC domain 162 393 IPR002182 GO:0043531
Lja3g0376 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Lja3g0376 710 Gene3D - 305 389 IPR042197 -
Lja3g0376 710 PRINTS Disease resistance protein signature 175 190 - -
Lja3g0376 710 PRINTS Disease resistance protein signature 246 260 - -
Lja3g0376 710 PRINTS Disease resistance protein signature 339 353 - -
Lja3g0376 710 PRINTS Disease resistance protein signature 559 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0376 Lja-Chr3 3829501 3831684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0376 172 546 WRKY Transcription Factor Family AT5G45050 23.020 3.68e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0376 - - lja:Lj2g3v3337370.1 1083.17