Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0373 ATGGGTTCCCTCTATGAGGTGCTGGGAATTTCAACTGGTGCAAGCTGCCTTGAGATAAAGACAGCTTACAGGAAGCTTGCGAGGACGTGCCACCCTGATGTTGTGGCCATAAATCAGAAGGAAAGCTCAGCGAACCAGTTCATGATGATCCACTTAGCTTACTCAACATTGTCTGACCCAAATAAGCGTGCTCAATATGATATAGAAATCTATGGACACAGAAGGCCAACAAGTGTAATTTCTATGTCAGCAAGAAATAAGACATCTTCACGTGCAGGAAGGAGATGGGAAACAGACCAATGCTGGTAG 309 0.4498 MGSLYEVLGISTGASCLEIKTAYRKLARTCHPDVVAINQKESSANQFMMIHLAYSTLSDPNKRAQYDIEIYGHRRPTSVISMSARNKTSSRAGRRWETDQCW* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0373 102 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja3g0373 102 Pfam DnaJ domain 4 67 IPR001623 -
Lja3g0373 102 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja3g0373 102 PRINTS DnaJ domain signature 5 23 IPR001623 -
Lja3g0373 102 PRINTS DnaJ domain signature 23 38 IPR001623 -
Lja3g0373 102 PANTHER - 2 102 - -
Lja3g0373 102 Gene3D DnaJ domain 2 92 IPR036869 -
Lja3g0373 102 CDD DnaJ 5 59 IPR001623 -
Lja3g0373 102 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 102 - -
Lja3g0373 102 SUPERFAMILY Chaperone J-domain 3 70 IPR036869 -
Lja3g0373 102 MobiDBLite consensus disorder prediction 82 102 - -
Lja3g0373 102 SMART dnaj_3 2 62 IPR001623 -
Lja3g0373 102 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0373 Lja-Chr3 3799284 3799775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0373 5 67 C2H2 Transcription Factor Family AT1G74250 46.269 7.61e-10 52.4