Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0372 ATGGGTTCCCTCTATGAGGTGCTTGGAATTTCAACAGGTGCAAGTTGCCTTGAGATAAAGACAGCTTACAGGAAGCTCGCAAGGACGTGCCACCCTGATGTTGTGGCTATGAATCAGAAGGAAAGCTCAGAGAAGCAGTTCATGATGATCCATTTAGCTTATTCAAAATTGTCTGACCCAAACAAGCGTGCTCAATATGATAGAGAGATCTTTGCACACAGAAGTGTAGTTTCTGTGTCAGCAAGAAATAAGACATACTCACATGCTGGAAGGAGATGGGAAACGGACCAGTGTTGGTAG 300 0.4433 MGSLYEVLGISTGASCLEIKTAYRKLARTCHPDVVAMNQKESSEKQFMMIHLAYSKLSDPNKRAQYDREIFAHRSVVSVSARNKTYSHAGRRWETDQCW* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0372 99 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja3g0372 99 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja3g0372 99 PRINTS DnaJ domain signature 5 23 IPR001623 -
Lja3g0372 99 PRINTS DnaJ domain signature 23 38 IPR001623 -
Lja3g0372 99 PANTHER - 2 99 - -
Lja3g0372 99 Pfam DnaJ domain 4 67 IPR001623 -
Lja3g0372 99 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Lja3g0372 99 CDD DnaJ 5 59 IPR001623 -
Lja3g0372 99 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 99 - -
Lja3g0372 99 SMART dnaj_3 2 62 IPR001623 -
Lja3g0372 99 Gene3D DnaJ domain 2 95 IPR036869 -
Lja3g0372 99 SUPERFAMILY Chaperone J-domain 3 72 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0372 Lja-Chr3 3784927 3786109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0372 5 77 C2H2 Transcription Factor Family AT1G74250 42.857 1.75e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0372 - - gmx:100305807 155.606