Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0352 ATGATGGTGATCATGCAAGACCATCAACAACAACAGCAGCAGCAGGATCCTCCTTCTGCACTGGTGCCACAACTCAACAACCCCCAATCTTCCTCAACCGCCACCACGCTTAGGTCACCTTCAACCACCGCAACAACCCAGCTTTGTTCCCCTCTTCCTCTCTCTCACCGCCAACCACTGCTCCCTTCATTTCCGCTCCCAATCGCGTCTGCGCTTCCCGCCGGGGACCCTGCTCCGCCGGCGGTGTCCCCGCTTGTCAGGGTCCGGCTGTCGGACATTGCTCCCTATGATGGGGCGCCGGCGGGTCCGTATGTCAGAGCGATGGAAGCGCTTTCTGCTTCTCTGACGAGGCACAATGCTGCTTTGATCGAGCTGGGGAGTGAAGACACTGCTCTCATGCGCTGCGGCTTGGAAGGTGCCAGGTTGTTTTTCAGGAGCAGGGCTCATCTTGGTGTTGGGAAGGGAAGCCGCGGGGTTTATACGTACAGGGCAGGGAGGGCTTTAGAGGATTGGGATTCATCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGTGTCTCGTTCTGCCTTGTGTGCTATTGCAAGGATTTTGCGCCTTAGAAGCGATGTTTTCACCCAATTGCTTGATGATGCTCCGTTGCCTGCTAACGAGGTGTCTTCATCTGTTCTTGTTGTGACCTACTCACATGCTTCTTTTCAAAATGGAGGCGGTAAGCCCACCATGAATGGTGAAGTTGAGAAGGGATTGCTGACATTGATATCTTCTGACACTCCTGGTCTCCAGGTATGTGACCCTAATGGGCGCTGGTATGCAGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCGCTTAGCCATGCTACTGCAGGCCTACGTCCAGCCGCATCATATAGAGCTTCTCCTGATTATTTTCCGGGTCCTAATAGTGGAAGAAGGACTTGTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGACTGTTCTCCAATTGCGGCAGCAGGCCATGCTATTCCTCATAGCTATGGTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGATAGACAACAGATGTGATATTGCTGATGTTGCTCAAAGCAATGTGAGTAAGGAACCATCATTGAGAAGTGTTCTATCAGATCCTTTGTCTGGTGCATTCCTTGAAGATGCAATGCTGGTCTCGTGTGGACATTCTTTTGGTGGTGCCCTGCTGAGGAGAGTCATTGAAACATCAAGATGCACTCTCTGCAATGTCGATGTTGAGACTGGTTCTCTGATCCCTAATCTCGCTCTGAGAGCTGCAGCTGCTGCTATCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTTCTCTTCGAAAGCGGCGTAAAGAAATGGGTGACCAAATGGATACAATGAGAAGAGTGAACAGGCTCCGCTTAATAAAAGAAAAACACGAAGAACATTTATATTCAGCAGAAGAGTGTCTGTGGATTCAGGAAAATGGAGAATTTGCTGCTGCTGATGGTCTCCAGCGGAGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGAAGAACACCAGAAAAACTAGTTGGGAAAGAAGCTGTCATTACTTCCCAGTGTCTCAATGGCTGGTATTCGCTCAAGATTATTGGAACCGAAGAGATTGTCCGTCTGCAGTACCGTTCTCTTAGGAAGCTCCCAAACTCACCAACCACGGAGCCAATCCAAAATAGCAGCTCTTAA 1791 0.4897 MMVIMQDHQQQQQQQDPPSALVPQLNNPQSSSTATTLRSPSTTATTQLCSPLPLSHRQPLLPSFPLPIASALPAGDPAPPAVSPLVRVRLSDIAPYDGAPAGPYVRAMEALSASLTRHNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYTYRAGRALEDWDSSPPCMADIFRCMGKVSRSALCAIARILRLRSDVFTQLLDDAPLPANEVSSSVLVVTYSHASFQNGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPNGRWYAADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFPGPNSGRRTCLAYRLMPQGNAILDCSPIAAAGHAIPHSYGPISVSQFMDDLAAEELIDNRCDIADVAQSNVSKEPSLRSVLSDPLSGAFLEDAMLVSCGHSFGGALLRRVIETSRCTLCNVDVETGSLIPNLALRAAAAAIKHEDDRRLFRNASLRKRRKEMGDQMDTMRRVNRLRLIKEKHEEHLYSAEECLWIQENGEFAAADGLQRRVQYPFSVNEKVIIKGNRRTPEKLVGKEAVITSQCLNGWYSLKIIGTEEIVRLQYRSLRKLPNSPTTEPIQNSSS* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0352 596 SUPERFAMILY Clavaminate synthase-like 174 361 - -
Lja3g0352 596 Gene3D - 158 370 IPR027443 -
Lja3g0352 596 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 79 591 - -
Lja3g0352 596 SUPERFAMILY RING/U-box 389 456 - -
Lja3g0352 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 457 IPR013083 -
Lja3g0352 596 MobiDBLite consensus disorder prediction 1 50 - -
Lja3g0352 596 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 79 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0352 Lja-Chr3 3608389 3620582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0352 370 593 Plant U-box Gene Family AT5G05230 35.242 9.04e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0352 - - adu:107477161 865.914