Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0351 ATGGCTCCAAAAAAAGGTGGCAAACCAGTAGCAGCTTCGAAGAAGAAAACTGAGAAGGTTACAAACCCGTTGTTCGAGAAGCGTCCCAAGCAGTTCGGAATCGGAGGGGCATTGCCTCCCAAGAGGGACCTTACCCGGTTTGTGAAATGGCCTAAGGTTGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCTCGACAAAAACCTCGCTACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCTGAGGCTGAAAACAAAACGGTTAAGACTGAGAAGCCAATCAATGTGAAGTATGGGCTCAATCATGTTACCTACCTTATTGAGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGACGTTGACCCTATTGAATTGGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAAGGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAACGAAGATAAATTGGAGTTCAGCCGAGTCTTGGAAGCTATCAAGGCTAACTTCAACGACAAATATGAAGAGTACAGGAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCTAAAACCAAGGCCAAGGAAAGGGTTCTTGCCAAGGAGGCTGCTCAAAGGATGAATTAG 777 0.4646 MAPKKGGKPVAASKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKVVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAENKTVKTEKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRMN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0351 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 115 205 IPR004038 -
Lja3g0351 258 SUPERFAMILY L30e-like 88 229 IPR029064 -
Lja3g0351 258 PANTHER BNAA03G47020D PROTEIN 2 256 - -
Lja3g0351 258 MobiDBLite consensus disorder prediction 11 25 - -
Lja3g0351 258 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g0351 258 PRINTS Ribosomal protein L7A/RS6 family signature 147 160 IPR018492 -
Lja3g0351 258 PRINTS Ribosomal protein L7A/RS6 family signature 163 173 IPR018492 -
Lja3g0351 258 PRINTS Ribosomal protein L7A/RS6 family signature 173 187 IPR018492 -
Lja3g0351 258 PRINTS Ribosomal protein L7A/RS6 family signature 128 142 IPR018492 -
Lja3g0351 258 Gene3D - 50 233 IPR029064 -
Lja3g0351 258 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 256 - -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 217 237 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 124 144 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 29 46 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 46 63 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 66 85 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 90 103 IPR001921 -
Lja3g0351 258 PRINTS Ribosomal protein L7A family signature 185 209 IPR001921 -
Lja3g0351 258 ProSitePatterns Ribosomal protein L7Ae signature. 166 183 IPR004037 GO:0042254|GO:1990904
Lja3g0351 258 Coils Coil 98 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0351 Lja-Chr3 3604679 3606551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0351 1 258 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.047 1.03e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0351 K02936 - fve:101294198 470.314