Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0349 ATGAGCTCTCGGGCTGGCAAGGGGCCTGCTGTGAAAAGCTACCGACGGAAGAAGTGTTTAATTGATCTCAACCTTGCTCCTGCGGTTACTGAGAATCGCGAGCAGGAAGGACCTTCCAGTCAGGTGGTGACTCAAGAAGTTCAAGGTGATCAGCAACCACCGGTTGCACAACCGCCACAGGATGCACTGCCACCAGAGGTTGCACAGCAGCCACAGGTTGCGCAGCCTCCACTGATTGATGTTGAGGCCATTGATGATGATGATGTTATTGAATCTAGCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAAATCGTGCAAGGGCTGTAGTTGATTTGGAGTCAGATGATCAGACCAGGGTGACCAACAATAATCGCAACAAACGCAGAAGAGAAACCTCTAACCAGACAATCATTAATTGCGATCTCTTCATAAATTTGGAAGGCACTAGCAATTCAATGAGGGAAACTGTTAAAAAGCCACCTGAACCTCCGAAGGAGCCTGTCTTTAGCTGCCCAATATGTATGGGTCCTTTGGTAGAAGAAATGTCAACAAGGTGCGGTCATATTTTTTGCAAGGCTTGCATCAAGGCTGCTATAAGTGCCCAGAATAAATGTCCTACTTGTAGAAAAAAGGTTACTGTGAAAGAGCTTATAAGAGTGTTTCTCCCATCTACTAACTAA 690 0.4594 MSSRAGKGPAVKSYRRKKCLIDLNLAPAVTENREQEGPSSQVVTQEVQGDQQPPVAQPPQDALPPEVAQQPQVAQPPLIDVEAIDDDDVIESSPRAFAEAKNNSRRNRARAVVDLESDDQTRVTNNNRNKRRRETSNQTIINCDLFINLEGTSNSMRETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKELIRVFLPSTN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0349 229 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Lja3g0349 229 SUPERFAMILY RING/U-box 173 218 - -
Lja3g0349 229 Pfam Zinc finger, C3HC4 type (RING finger) 174 211 - -
Lja3g0349 229 PANTHER ELFLESS, ISOFORM B 13 229 - -
Lja3g0349 229 MobiDBLite consensus disorder prediction 30 73 - -
Lja3g0349 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 228 IPR013083 -
Lja3g0349 229 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Lja3g0349 229 MobiDBLite consensus disorder prediction 33 55 - -
Lja3g0349 229 PANTHER RING ZINC FINGER-RELATED 13 229 - -
Lja3g0349 229 SMART ring_2 174 211 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0349 12 228 C3H Transcription Factor Family AT5G48655 50.685 3.32e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0349 K22651 - gmx:100792853 259.225