Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0348 ATGGCTCCCAAAAAAGGTGGAAAAGCTACAGTTGCTGCCTCCAAGAAGAAAACCGAGAAGGTTACGAACCCGTTGTTCGAGAAGCGTCCCAAGCAGTTTGGAATCGGAGGAGCGTTGCCTCCCAAGAGGGACCTAACAAGGTTTGTGAAATGGCCTAAGGTCGTTCAGATTCAAAGGAAGAAGAGGATCCTTAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACAAAGACCCTTGACAAGAACCTCGCTACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAAGATAAGGCAGAAAAGAAAGAGCGTCTTTTGAAAAGGGCTCAGGCCGAGGCTGAAAACAAAACAGTTAAGACTGAGAAGCCAATCAATGTGAAGTATGGGCTCAATCATGTTACCTACCTTATTGAGCAGAATAAGGCCCAGCTGGTTGTGATTGCTCACGACGTTGACCCTATTGAATTGGTTGTCTGGCTTCCAGCCTTGTGCAGGAAGATGGAAATTCCTTATTGCATTGTCAAGGGAAAGGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCTTCTGTTTTGTGCTTGACAAGTGTGAAGAACGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAAGCTATCAAGGCTAACTTCAACGACAAATATGAAGAGTACAGGAAGAAGTGGGGCGGTGGGATCATGGGTTCCAAATCCCAAGCTAAAACCAAGGCGAAGGAACGCGTTCTTGCCAAGGAGGCTGCTCAAAGGATGAATTAG 780 0.4641 MAPKKGGKATVAASKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKVVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAENKTVKTEKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRMN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0348 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Lja3g0348 259 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g0348 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Lja3g0348 259 PANTHER BNAA03G47020D PROTEIN 2 257 - -
Lja3g0348 259 Coils Coil 99 122 - -
Lja3g0348 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Lja3g0348 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Lja3g0348 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Lja3g0348 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Lja3g0348 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Lja3g0348 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 206 IPR004038 -
Lja3g0348 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 257 - -
Lja3g0348 259 Gene3D - 51 234 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0348 Lja-Chr3 3587192 3590962 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0348 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 9.87e-167 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0348 K02936 - gmx:100775472 473.011