Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0338 ATGCTCCTGGATAGGTATGGCATTCAGGAAACCCATTATGAGGTTCTTAATGTCAAGGAAGATGCAAATTATACAGAAATTCGTGCCGGTTACCGAAGTGCTGCACTCAGTTTACATCCTGATAAGCTATTGAAGACACCCGAGACATCCAGCAGTGATCAAACAACTGGAGAGAGATTTCTCAGAGTACAAAAGGCATGGGAAGTTCTAAGCGATTCGAGCTCCCGTTCATCGTATGATAATGAGTTGAAAAGCTCAAGGCGGGATAGGGATGCTTTGGCCGCTGAAGTTGCAGAAGATTTGAGCTTACATGATATGATAGCTGAAGATGCTGATGAAGCATTGGAACTGTTTTATCAGTGCCGCTGTGGTGATTACTTCTCTATAGACTCATTGGAATTGCAGAAAATGGGGTATTCCTTATTCAGGGAAGGAAGCAACATATCTATACTCAATGTTGATACTTTACCAGGATCAGTGATTCTTCCGTGTGGATCTTGTTCATTAAAAGCTCGTTTGGTACTCAGTACGGATGACCATTGA 543 0.4236 MLLDRYGIQETHYEVLNVKEDANYTEIRAGYRSAALSLHPDKLLKTPETSSSDQTTGERFLRVQKAWEVLSDSSSRSSYDNELKSSRRDRDALAAEVAEDLSLHDMIAEDADEALELFYQCRCGDYFSIDSLELQKMGYSLFREGSNISILNVDTLPGSVILPCGSCSLKARLVLSTDDH* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0338 180 PRINTS DnaJ domain signature 13 31 IPR001623 -
Lja3g0338 180 PRINTS DnaJ domain signature 31 46 IPR001623 -
Lja3g0338 180 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lja3g0338 180 PANTHER DPH3 HOMOLOG-RELATED 3 177 IPR044248 GO:0017183|GO:0046872
Lja3g0338 180 SUPERFAMILY CSL zinc finger 98 179 IPR036671 -
Lja3g0338 180 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 97 176 IPR007872 -
Lja3g0338 180 Pfam DnaJ domain 11 80 IPR001623 -
Lja3g0338 180 Pfam CSL zinc finger 101 174 IPR007872 -
Lja3g0338 180 Gene3D DPH Zinc finger 95 180 IPR036671 -
Lja3g0338 180 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Lja3g0338 180 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Lja3g0338 180 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 3 177 - -
Lja3g0338 180 Gene3D DnaJ domain 5 94 IPR036869 -
Lja3g0338 180 CDD DnaJ 11 70 IPR001623 -
Lja3g0338 180 SMART dnaj_3 10 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0338 Lja-Chr3 3526135 3527704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0338 12 80 C2H2 Transcription Factor Family AT1G74250 43.478 3.07e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0338 K17867 - gmx:100814856 264.233