Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0334 ATGGCATCTTCTTCCGGAGCTTCTCAAATAAAATGTGCTGTACTGGTTGCATGTATTACTGGTTGCATACTGCTCTACTTTAGAGTCAAGAAGAAGAGACAAATCATCAAGAAAGATATTGTCGTAAAGAGTGTAGAGGGAAATCCAATGTCAAACAACTCTCCTCAAATATATCATGATGTTTTTGTGAGCTTTAGAGGTGAAGACATTCGTCACGGTTTTCTTAGTCATTTGACCAAGGCTTTTATTCAAAAGCAAATACAGGCCTTTGTGGATGATAAACTTAAGAGAGGAGATGATATATCCTCATCACTTTTTGAAGCAATTGAAGGCTCGTCCATTTCATTGATCATATTCTCTGAAAATTATGCTTCTTCACATTGGTGTTTAGAAGAACTTGTGAAAATACTTGAGTGCAAAGAGAAACATGGACAGATTGTAATACCTGTTTTCTACAAGGTAGACCCATCAGATGTACGACATCAAAGGAATAGTTATGAAAGTGCACTTACTGAACATGAAAAGAAGTATAATTTGCACAGGGTTCAAATCTGGAGACAAGCTTTGAACAAATCTGCCAATTTATCAGGAATTAACTCATTAAATTTTCAGAATGATGCCGATCTGCTTGAAGAAGTCATCAATCATGTGTCCACGAGGTTGATGCCTAAGCATCCAATTAACACAAAAGGACTTATTGGAATGGAAAAGCCATCTGCACATTTGGAATCATTGTTATGCCGGGAGTCAAAAGAAGCACGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACCGTTGCAGAAGAGATATTCAACAAAAAATGTTTTGAGTATGAAAGATCTTGTTTTTTAGAAAAGGTAAATAATGAATTACAAAAAGATGGAATAAGGTCTTTGAAAGAAAAACTTTTATCTACACTATTGGCAGAAAATGTGAAAATTGACACTCCAAATAGGTTGCCTAGTGATATTAAGAGAAGGATTGGTCGTACGAAGGTTCTTATTGTTCTTGATGATGTGAATGATATCGACTTGGTTGAAAGTATATTTGGAACTCTTGATTGGCTTCACGCAGGTAGTATAATAATGATAACCACTAGAGATAAGCAAGTACTTATTTCTAATAAAGCTCATGATATATACCATGTTGAGGAATTGAGTTTTAGTGAAGCACTTCAACTTTTCAATTTGAATGCATTTGACCAAAGTCATCTTGAAAAGGGCTATTATGATCTATCACAAAGGTTGGTCAATTATGCCAAAGGTGTTCCATTGGTTCTTAAAGTCTTGGGTCGTCTTCTTCGTGGAAGAAGTAGGAAAGAATGGGAAAGTCAGCTAGACAAGCTTACAAAAGGGTCAGTTAAAGAAGTCCATGATCTCATGAGACTAAGTTATGATAATCTTGATCGCAGAGAGCAACAAATTCTTTTAGATGTTGCCTGTTTCTTTAATGGTATGAAAATGAAAATGAGAACGTTATTACCGTTATTGAAAGATCATGAAAATGATAATTCTGGGGTTGTTGGTTTAGAAAGGCTAAAAGATAGAGCTCTAGTGACTATTTCTAAGGATAATACTGTGTCTATGCATGACATTATACAAGAAATGGGCCGGGAGATTGTTCGCCAAGAATCTAAGGACCCTGGACAACGGAGTCGACTATGGGATCACAACGACATTTATGAAGTATTCAAATATAACAAGGGGACTGAGGCTATTAGAAGCATATGGGGAAACTTTTCAGAAATTAGGAATCTGGATTTAAGCCCTGACGTATTTGTTAAGATGAGCAAACTCCAATTTTTGTGTATTTATGAGGAAGGTGGTACAAAGTGTCGGGATCTTTTTTCTCAGTGCAGGGGTCTTTTGCTTAGTCTAAAATATTTGATATGGACTGGTTGCTCATCATGGCCACAGTGTTTTTCTCCCGAAAGTCTTGTTATATTGGTGTTATACGAAGGCAAGATGCAAAGACTTTGGCACGGAGTACAGAATTTGGTTAATTTGAAAGCAGTTTTCGTCGAAAGATGCTCTTTCTTAGAGGAGCTTCCGGACTTTTCAAAAGCCATAAATCTCGAGTTTCTATCTCTCTGTGATTGTGTGAAATTGAAGAGTGTCCATCCATCTATTTACTCTCTCGACATGCTTCTGATACTCAATCTAGAGGGGTGCAAGTCCTTGACCGAATTTACAAGTGATACCCGTTTAAGCTCCCTATTGTCTCTCAACCTTACAAGTTGCACAAGTCTAAGGAAGTTGTCATTGACATCAGAGAATATAACACACCTATATTTGGAAGGAATTCCTGCCAATGTATTGCCTTCATCGTTTGCATGTCAAAGCAAGCTAGGAAAGCTGGTATTACGGGGAACTGAATATGAGAGGTTACCTGCATGCATCACGAATCTTACAAGATTGCTATACCTTGACCTAACTTCTTGTGCTAAACTTCAGTCAATACCAGTGCTTCCCCCGTCCCTTGAAGTTTTATTTGCTGGTGGGTGCAGATCACTGAAGACAATATTCTTTCCTTCAACTGCTGCAGAACAGTTCAAGGAAAACAAGAAATTTGTTTTCTTCGATAATTGCTGGAACTTGGATGAACGTTCACTCTGGGGTATTGAGTTGAATGCACAAATCAACTTGATGAAACTTACATATCAACATCCATTCGCACCAGTGTATGATGATCAAGTTGACAAATATGAGAATGGTTTTGTTCGAGCAATATACGAGTATCCAGGATGCATTGTTCCAAAGTGGATGGAGTACAAGACAACAAAGGGTGACATGATTATTGATCTTGGTCGTGCTCCTTTGCTGGGTTTCATTTTTTGTTTCATCCTGGCTGCGGAGGAGGACCCAACAGAAGTTCGTGGGGAAGTTAAATTTGAGATCACTATAATTGATGGTGAGGGTGAAAAGGGTTGTGTCATGATTTCATGGATTTCAACGGATAATGTTTTCTTGATATATGACAAAAAATGTTCCGACAACATAATTAGCGCAACCAATAATCAGACAAGGTTTAAAATCAAGGTTGCAATACTGGAAGTAAGATCCATAGCTGGTCGAGTGATGAATTGGAAGATCAAAGAGTTTGGAGTCAGCCCCATAAACACCTTGATATATGATAGTTTCAGGCACATCGCAAGGAACTGTGAATGTGATGCAGCGGAGGCGTCGGCTGTTGTGCATGAGCAAGCACGTGAAAACCCTGGTGAGCCAGCCGCCACAGAGGGAAGGATGGGTTACGGCTCCACTAATCGCGGCATAGAGCATGCAACTCGTGGAAAAGAGAGTGAAGAAGGCATTGATGGATGGACCACAGTCAAGGGAAAGAAACCAGGGCCAGGAAAGATTGTTGAGGAAAAAAAGGGCATTGTGATTAATGAAGGCCACGCAGGCCCTTTCAGTGCAATCACCAGCGAGCCCCCTCCTCACACACCGCTTGGAAATTCTTCTGCACCAGAATTGGAGGATGGGGAGGTTGCTGTTGATGACCCCCCGGATGCACAACAGCAATAA 3537 0.3944 MASSSGASQIKCAVLVACITGCILLYFRVKKKRQIIKKDIVVKSVEGNPMSNNSPQIYHDVFVSFRGEDIRHGFLSHLTKAFIQKQIQAFVDDKLKRGDDISSSLFEAIEGSSISLIIFSENYASSHWCLEELVKILECKEKHGQIVIPVFYKVDPSDVRHQRNSYESALTEHEKKYNLHRVQIWRQALNKSANLSGINSLNFQNDADLLEEVINHVSTRLMPKHPINTKGLIGMEKPSAHLESLLCRESKEARVIGIWGMGGIGKTTVAEEIFNKKCFEYERSCFLEKVNNELQKDGIRSLKEKLLSTLLAENVKIDTPNRLPSDIKRRIGRTKVLIVLDDVNDIDLVESIFGTLDWLHAGSIIMITTRDKQVLISNKAHDIYHVEELSFSEALQLFNLNAFDQSHLEKGYYDLSQRLVNYAKGVPLVLKVLGRLLRGRSRKEWESQLDKLTKGSVKEVHDLMRLSYDNLDRREQQILLDVACFFNGMKMKMRTLLPLLKDHENDNSGVVGLERLKDRALVTISKDNTVSMHDIIQEMGREIVRQESKDPGQRSRLWDHNDIYEVFKYNKGTEAIRSIWGNFSEIRNLDLSPDVFVKMSKLQFLCIYEEGGTKCRDLFSQCRGLLLSLKYLIWTGCSSWPQCFSPESLVILVLYEGKMQRLWHGVQNLVNLKAVFVERCSFLEELPDFSKAINLEFLSLCDCVKLKSVHPSIYSLDMLLILNLEGCKSLTEFTSDTRLSSLLSLNLTSCTSLRKLSLTSENITHLYLEGIPANVLPSSFACQSKLGKLVLRGTEYERLPACITNLTRLLYLDLTSCAKLQSIPVLPPSLEVLFAGGCRSLKTIFFPSTAAEQFKENKKFVFFDNCWNLDERSLWGIELNAQINLMKLTYQHPFAPVYDDQVDKYENGFVRAIYEYPGCIVPKWMEYKTTKGDMIIDLGRAPLLGFIFCFILAAEEDPTEVRGEVKFEITIIDGEGEKGCVMISWISTDNVFLIYDKKCSDNIISATNNQTRFKIKVAILEVRSIAGRVMNWKIKEFGVSPINTLIYDSFRHIARNCECDAAEASAVVHEQARENPGEPAATEGRMGYGSTNRGIEHATRGKESEEGIDGWTTVKGKKPGPGKIVEEKKGIVINEGHAGPFSAITSEPPPHTPLGNSSAPELEDGEVAVDDPPDAQQQ* 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0334 1178 ProSiteProfiles TIR domain profile. 57 221 IPR000157 GO:0007165
Lja3g0334 1178 SUPERFAMILY L domain-like 532 869 - -
Lja3g0334 1178 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 59 1053 - -
Lja3g0334 1178 Pfam TIR domain 59 228 IPR000157 GO:0007165
Lja3g0334 1178 MobiDBLite consensus disorder prediction 1072 1178 - -
Lja3g0334 1178 SMART till_3 58 195 IPR000157 GO:0007165
Lja3g0334 1178 Gene3D - 58 221 IPR035897 -
Lja3g0334 1178 Gene3D - 388 472 IPR042197 -
Lja3g0334 1178 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 59 1053 IPR044974 GO:0006952
Lja3g0334 1178 Pfam NB-ARC domain 245 469 IPR002182 GO:0043531
Lja3g0334 1178 Gene3D - 222 384 IPR027417 -
Lja3g0334 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 481 IPR027417 -
Lja3g0334 1178 MobiDBLite consensus disorder prediction 1096 1112 - -
Lja3g0334 1178 Gene3D Ribonuclease Inhibitor 737 874 IPR032675 -
Lja3g0334 1178 Gene3D Ribonuclease Inhibitor 559 736 IPR032675 -
Lja3g0334 1178 SUPERFAMILY Toll/Interleukin receptor TIR domain 54 197 IPR035897 -
Lja3g0334 1178 PRINTS Disease resistance protein signature 255 270 - -
Lja3g0334 1178 PRINTS Disease resistance protein signature 804 820 - -
Lja3g0334 1178 PRINTS Disease resistance protein signature 423 437 - -
Lja3g0334 1178 PRINTS Disease resistance protein signature 330 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0334 Lja-Chr3 3462799 3476112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0334 43 824 WRKY Transcription Factor Family AT4G12020 32.668 8.86e-93 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0334 - - lja:Lj0g3v0213739.1 2209.88