LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0333	ATGTGGGACTTGACTCCAACACTTGATTCCAACAATCTCCCCCTCAAGTGTGAGTCCCTCAACCACATCACCCATTGTCCTCCTGGTGTGGCGGCAAAGCTGATGTCGAACAACACTTCTCAAATAAGTTATGATGTTTTTGTGAGCTTTAGAGGTGTGGACATCCGTCACGGTTTTCTTAGTCATTTGACTAAGGCTTTTCCCCAAAAGCAAATAAACGCTTTTGTAGATGATAAACTTAAGAGGGGAGATGATATATCGCCTGCACTTCTTGAAGCAATTGAAGGATCATTCATTTCATTGATCATATTCTCAGAAAACTATGCTTCTTCACATTGGTGTTTGGATGAACTTGTGAAAATACTTGAGTGCAAAGAGAAATTTGGACAGATTGTAATACCTGATTTCTACAAGTTAGACCCTTCAGATGTACGACATCAAAGGAAGAGTTATAAAAATTCACTCGTTGAACATAAAAGGAAGTATAATTTGTACAAGGTGGAGCTATGGAGGCAAGCTTTAAACAAATCTGCTAATTTATCAGGAATTAAGTCATTGGATTTTCATGAATTAACTATTTATCTTATATTAAGAAAACTTGTTGGAATGGAAAAACCAATTGCACATTTGGAATCATTGTTATGCCAAAAGTCAAAAGAAGCGCGTGTTATTGGAATTTGGGGTATGGGTGGTATTGGCAAGACAACTATTGCAGAAGAGATATTTAACAAAAAACATTTTGAGTATCAAGGATCTTGTTTTTTGGAGAAGGTAAACGATGAATTACAAAAACATGGAATAAGGTATTTGAAGGAAAAACTTTTTTCTACACTATTAGCAGAAGATGTGAAAATTGACACCCCAAATAGATTGTCCAGTTATATTAAGAGAAGGATTGGTCGTCTGAAGGTTCTTATTGTTCTTGATGATGTGAACGGTACAGATGAGGTAGAAAATATATTTGGAACTCTTGATTGGCTTCGGGCATGTAGTAGAATAATAATAACAAGTAGAGATAAGCAAGTACTTATTTCTAACAAAGCTTATGACATATACCAGGTCGGGGCATTGAGTTCTAGTGAAGCACTTGAGCTTTTCAATTTTAATGCATTTGACCAAACTCATCTTGACATGCGGTCGTATAATGATTTGTCGCGAAGGGTGGTCAATTATGCTAAAGGCGTTCCATTGGTTCTTAAAGTTTTGGGTCATCTTCTTTGCAGAAAAAATAAGGAAGTATGTGAAAGTCAGCTAGACAAACTTATGAAAATGTCAATTAAAAAAGTTCATGATGTAATGAAACTAAGCTATGATGATCTTGATCTCAAAGAGACAGATATTCTTTTAGATATTGCATGTTTCTTCAACTGTATGCAAATGAAAGTGAGCTCATTAGTGGAGTTATTGAAAGATCATGAAAATGATAATTCAGTGGTTGTTGGGTTAGAAAGACTAAAAGACAAAGCTCTTATGACTATTTCTGAAGATAATGTTGTTTCTATGCATGACATTATTCAAGAAATGGGTCGGGAGATTGTTCGCCAAGAATATGAGAACTCTGGACGCCCCAGTCGACTATGGCATCAAGACGATATTCATGAAGTATTGGAAAATAACAAGGGGACTGAGGCTATTAGAAGCATAACTATAGACTATTCATTAATTATTCATCTGAAGTTGAGCCCTTACGTATTTGCTAAGATAAGCAAACTACAATTTTTGAAAATTCAAGGGAGAGGTCGTGTGAAGTGCTATGATCTTTTTCTTCAAGGGTTTAAAGTTTGGCCTCTAAAATATTTGTTGTGGAGGGATTGCCCTCTAAAATCACTGCCAGAGTGTTTTTCTGCTAAAAGTATTGTTAGATTGGAGTTGCCAGGAGGTCAGATGCAAAAACTTTGGGATGGAGTGAAGAATTTGGTTAATTTAAAAGAAGTTCTACTCGCTAGAGGCTATTTCCTGGAGGAGCTTCCAGACTTTTCAAAAGCCATAAATCTCGAGGTTCTGGATGTCTGTGATTGTGTGAGATTGAAGAGTGTCCATCCATCTATTTACTCTCTCAACAAGCTTCAGATATTCAAACTAAAAGGGTGCGAGTCCCTTACCGAATTTACAAGTGATACTCGTTTAAGCTCCTTGTGGTATCTCGACCTTACAAGTTGCACAAGTCTAAGGAAGTTGTCAGTGACCTCAGAGAATATCACAGACCTACGTTTGGGGGGAATTCCTGCCAATGTATTGCCGTCATCATTTGCTTGTCAAAGCAAGCTAGAAATCTTGGATTTACGCAAAACTAAATATGAGACTTTACCTTCAAGCATCAAGAATCTTACAAGATTGCAATGTCTACTCATATCTGGCTGTTTTGAACTTCTGTCAATACCGGTGCTTCCCCTGTCCCTTGAAACTCTATCAACTGATGGATGCAAATCACTAAAGACAATATTCTTCCCTTTAACAGATGCTGAACAATTCAACGAAAAAAGGAAAAAAGTTTCATTCTGGAATTGCTGGAACTTGGATGAACGTTCACTTAGGGATATTGAGTTGAATGCACAAATCAACTTGATGAAACTTGCATATCAACATTCATCCACACCACAACATAAAGATGACCATGTCTTTCGAGCATCGTACTTGTATCCTGGGTGGTGTCGGGTTCCAGAGTTGTGCAGGGGTCCAAAGTGGTTGGAGTACAAGACAACAAATGATGAAATGATTATTAATCTCTCTTCTACCCAACTCTCCCCTTTGTTGGGTTTCATTTTTTGCTTCATCCTCGCTGGGGAGGACTCAAGAGAATATGGTGGACCAGTTAAGTTTGATATCACTATATTTGATGGTGAGAGTGAGGATAAAAAGGGTTATGTGATGGATTCATATATTGCAACGGGTCATCTATGCTTCATCTACGACAAAAAATGCTCTCACTTCATAACTAGCGCAACAAAAAATAAGACAAGGTTTAAAATTAAGGTTGCAACACGGGCAGTTAAATCCAAAATGGGTCGAGTGATGAACTTGAAGATCATAGAGTTTGGAGTCAGCCCCGTAAACACCTTGACATATCACAATTTCAATCAGCAAATGAAATTTTGTGATTCCATAATCAAATGCGCACCTGAATCATTCGCAACATCATCCTATATATTTCCTTCCTGCAGTTGA	3165	0.3741	MWDLTPTLDSNNLPLKCESLNHITHCPPGVAAKLMSNNTSQISYDVFVSFRGVDIRHGFLSHLTKAFPQKQINAFVDDKLKRGDDISPALLEAIEGSFISLIIFSENYASSHWCLDELVKILECKEKFGQIVIPDFYKLDPSDVRHQRKSYKNSLVEHKRKYNLYKVELWRQALNKSANLSGIKSLDFHELTIYLILRKLVGMEKPIAHLESLLCQKSKEARVIGIWGMGGIGKTTIAEEIFNKKHFEYQGSCFLEKVNDELQKHGIRYLKEKLFSTLLAEDVKIDTPNRLSSYIKRRIGRLKVLIVLDDVNGTDEVENIFGTLDWLRACSRIIITSRDKQVLISNKAYDIYQVGALSSSEALELFNFNAFDQTHLDMRSYNDLSRRVVNYAKGVPLVLKVLGHLLCRKNKEVCESQLDKLMKMSIKKVHDVMKLSYDDLDLKETDILLDIACFFNCMQMKVSSLVELLKDHENDNSVVVGLERLKDKALMTISEDNVVSMHDIIQEMGREIVRQEYENSGRPSRLWHQDDIHEVLENNKGTEAIRSITIDYSLIIHLKLSPYVFAKISKLQFLKIQGRGRVKCYDLFLQGFKVWPLKYLLWRDCPLKSLPECFSAKSIVRLELPGGQMQKLWDGVKNLVNLKEVLLARGYFLEELPDFSKAINLEVLDVCDCVRLKSVHPSIYSLNKLQIFKLKGCESLTEFTSDTRLSSLWYLDLTSCTSLRKLSVTSENITDLRLGGIPANVLPSSFACQSKLEILDLRKTKYETLPSSIKNLTRLQCLLISGCFELLSIPVLPLSLETLSTDGCKSLKTIFFPLTDAEQFNEKRKKVSFWNCWNLDERSLRDIELNAQINLMKLAYQHSSTPQHKDDHVFRASYLYPGWCRVPELCRGPKWLEYKTTNDEMIINLSSTQLSPLLGFIFCFILAGEDSREYGGPVKFDITIFDGESEDKKGYVMDSYIATGHLCFIYDKKCSHFITSATKNKTRFKIKVATRAVKSKMGRVMNLKIIEFGVSPVNTLTYHNFNQQMKFCDSIIKCAPESFATSSYIFPSCS*	1055

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0333	1054	Gene3D	-	41	200	IPR035897	-
	Lja3g0333	1054	Gene3D	Ribonuclease Inhibitor	707	858	IPR032675	-
	Lja3g0333	1054	Pfam	NB-ARC domain	209	438	IPR002182	GO:0043531
	Lja3g0333	1054	PRINTS	Disease resistance protein signature	707	723	-	-
	Lja3g0333	1054	PRINTS	Disease resistance protein signature	223	238	-	-
	Lja3g0333	1054	PRINTS	Disease resistance protein signature	298	312	-	-
	Lja3g0333	1054	PRINTS	Disease resistance protein signature	392	406	-	-
	Lja3g0333	1054	SMART	till_3	43	180	IPR000157	GO:0007165
	Lja3g0333	1054	SUPERFAMILY	"Winged helix" DNA-binding domain	427	537	IPR036390	-
	Lja3g0333	1054	Gene3D	Ribonuclease Inhibitor	531	706	IPR032675	-
	Lja3g0333	1054	SUPERFAMILY	Toll/Interleukin receptor TIR domain	39	182	IPR035897	-
	Lja3g0333	1054	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	43	1036	-	-
	Lja3g0333	1054	Gene3D	-	356	441	IPR042197	-
	Lja3g0333	1054	ProSiteProfiles	TIR domain profile.	42	177	IPR000157	GO:0007165
	Lja3g0333	1054	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	451	IPR027417	-
	Lja3g0333	1054	Pfam	TIR domain	44	184	IPR000157	GO:0007165
	Lja3g0333	1054	SUPERFAMILY	L domain-like	550	842	-	-
	Lja3g0333	1054	Gene3D	-	201	351	IPR027417	-
	Lja3g0333	1054	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	43	1036	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0333	Lja-Chr3	3454110	3460576	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0333	39	794	WRKY Transcription Factor Family	AT4G12020	32.908	2.18e-89	313

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0333	-		-	lja:Lj0g3v0213739.1	1271.14