Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0326 ATGTACTTGAGGAGAATACAGTGCCGAGATCGGAGATGGGCCTTGTTGTTGCAGCCATCTAAATACTTCTTTAGACCAAAATTCTCTGATCATCCATTTCATTCCTTGTCCAATAAGACCACTGTGAAAGAATATGCTTCACATGTCAGTATCACCAGAAGACATCTTCTAGGTTCATATTCATCTAGAAACAGTTTTTCTGGTCTGGACCAAAGGTGTAGTGTAAGTCTCAAGAGTACTCAGTTACGCGCTTACAGTTCTGAGAGTGATGGAAGAAATGCTAGTGAAAATAAACAGGTACACGTTAATGATGGAGCTAACTTAGACAAGGGACAAAATCAACAAAAGAAGTCTCGGGAAGATGTCAAGCACTGCAATGCACATGCCCAGCTTGGAGAACAGGATCAAGAGGAATGGCTAAAGAATGAGAAGCTTTCCGTAGAAAGTAAAAGGAGAGAATCGCCGTTTTTGACAAGAAGAGATAAGTTCAGAACTGAGTTTTTGAGAAGAATTGTTCCGTGGGAGAAAATAAACGTTTCTTGGGACACATTTCCTTATCACATTCATGAGCATACAAAAAGTCTTCTGATGGAATGTGCTGCTTCACATTTGAGACATAATAAGTTTACTTCAACCTTTGGTACTCACCTCACTTCTTCAAGTCGAAGAATATTGCTTCAGAGTATTCCTGGCACTGAGCTCTATCGGGAGAGATTAGTTAGAGCTCTTGCACAAGATTTACAAGTTCCATTGTTGGTGCTTGATAGCAGCGTCCTTGCTCCTTATGATATTGATGATGATTTATCGTCAGAATATGAGTCCGATGAGGATAATGAAGAATCTGGGGAGGAAGGTTCTTTGGAGTCAGAGAATGATGATGATAATGATGCTAGTAGTGAAGAAGAGTCTACTAGCAGTACTGATCATGACGATGCACTGGCATCTGCTGAAGCAGCCCTAGAGAAGGTCAAAGCGGCTGTTCAGAAACTTGTCCCATATGATGTTGAAGAATTGGCTAAGATAACACATGGAGAGCCTGCGGTTTCTGAGCCATCCAAGTCTAATGATGACAAGTCCGATGATAAATTTGGATGTCAGCTAAGAAAAGGCGACCGTGTGAAGTACACTGGGCCATCTATTGAAGTTACAGATGATGATAGGATAATACTTGGGAAGATACTGACATATGATGGTTCAACTAATGCTTATACTATTATACATAGCAGGCCTTTAGCGAATGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTGGCTGTCATTTTGGATATTAGTGAAGATAGGGAAAATGAGGTTGAGCTGGAAAGTGTTAATAACGATGGTAGAAAGCCACCAGTTTATTGGATTAATGTTAAGAACATTGAGCATGATCTTGATGCTCAATCACAGGATTGTTACTTAGCAATGGAGGCTTTACGTGAGGTTTTGAATTCCAAACAACCTCTGATTGTCTATTTTCCAGACGGTTCACAGTGGTTGCATAAATCAGTTCCCAAGTCAATCCGAAGTGAGTTTTTTCACAAGGTTGAAGAGATGTTTGATCAGTTATCTGGCCCCATAGTATTGATTTGTGGGCAAAACAAAGCTCAGTCTGGAACAAAGGAGAAAGGACAATTTACAATGATACTTCCAAACTTCGCTCGCCTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTTGACTGACAAAGGGCAAAAGACATCAGATGATGATGAAATTAACAAGCTCTTCTCTAATGTGGTATCTATACAGCCACCCAAGGATGAGAATCTACTGGCAACATTCAAGAAACAACTTGAGGAAGACAGGAAAATTGTGATTTCACGTAGTAACTTGAATGAACTACGGAAAGTTCTCGAAGAACATCAGCTGTCATGTGTGGACCTCTTGCATTTGGATTCTGATGATGTCATTTTGACTAAGCAAAAAGCTGAAAAAGTAGTGGGCTGGGCAAAAAATCATTACTTGTCGTCATGCCTGCTTCCTTGTGTTAAAGGAGATAAATTGTGTCTGCCTCGGGAAAGTCTTGAAATCGCAATCTCAAGGTTGAAGGGGGTGGAAACAATGTCAAGGCAACCTTCTCAGAGCCTCAAGAACCTTGCGAAGGATGAGTTTGAGAGCAACTTCATTTCAGCTGTTGTGCCTCCCGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAGAAGGCACTTAATGAACTTGTTATTCTTCCAATGAGAAGACCTGAACTTTTCACTCATGGAAATCTATTACGGCCTGTCAAAGGAATATTACTGTTTGGTCCACCTGGAACTGGGAAAACCCTTATGGCCAAGGCACTTGCCACAGAAGCTGGTGCAAACTTTATCAGCGTCTCTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAATTAACCAAAGCACTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGCGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAACGAGTTCATGGCTGCGTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATACTCATCCTTGGTGCAACAAACCGACCATTCGACCTTGATGATGCTGTTATTCGTCGCTTACCACGAAGGATATATGTGGATTTACCAGATGCTGATAATCGAAAGAAGATTTTGAGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATCACTGCTGCATATAGACCTGTTCAAGAGCTCTTAGAGGAGGAAAAAGCGGGAGACAATAACATCACAAATGTTGCATTAAGGCCTCTTAATTTGGACGATTTTGTTCAGTCGAAATCCAAGGTGGGACCATCAGTTGCTTATGATGCAGTAAGCGTAAATGAGTTGAGAAAGTGGAATGAAATGTACGGTGAGGGCGGCACTAGGACCAAGTCACCATTTGGATTTGGACAAAATAACCAGTAG 3081 0.4132 MYLRRIQCRDRRWALLLQPSKYFFRPKFSDHPFHSLSNKTTVKEYASHVSITRRHLLGSYSSRNSFSGLDQRCSVSLKSTQLRAYSSESDGRNASENKQVHVNDGANLDKGQNQQKKSREDVKHCNAHAQLGEQDQEEWLKNEKLSVESKRRESPFLTRRDKFRTEFLRRIVPWEKINVSWDTFPYHIHEHTKSLLMECAASHLRHNKFTSTFGTHLTSSSRRILLQSIPGTELYRERLVRALAQDLQVPLLVLDSSVLAPYDIDDDLSSEYESDEDNEESGEEGSLESENDDDNDASSEEESTSSTDHDDALASAEAALEKVKAAVQKLVPYDVEELAKITHGEPAVSEPSKSNDDKSDDKFGCQLRKGDRVKYTGPSIEVTDDDRIILGKILTYDGSTNAYTIIHSRPLANGQRGEVYEVNGDRVAVILDISEDRENEVELESVNNDGRKPPVYWINVKNIEHDLDAQSQDCYLAMEALREVLNSKQPLIVYFPDGSQWLHKSVPKSIRSEFFHKVEEMFDQLSGPIVLICGQNKAQSGTKEKGQFTMILPNFARLAKLPLSLKRLTDKGQKTSDDDEINKLFSNVVSIQPPKDENLLATFKKQLEEDRKIVISRSNLNELRKVLEEHQLSCVDLLHLDSDDVILTKQKAEKVVGWAKNHYLSSCLLPCVKGDKLCLPRESLEIAISRLKGVETMSRQPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFTHGNLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISVSGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDADNRKKILRIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCITAAYRPVQELLEEEKAGDNNITNVALRPLNLDDFVQSKSKVGPSVAYDAVSVNELRKWNEMYGEGGTRTKSPFGFGQNNQ* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0326 1026 MobiDBLite consensus disorder prediction 350 364 - -
Lja3g0326 1026 MobiDBLite consensus disorder prediction 84 112 - -
Lja3g0326 1026 ProSitePatterns AAA-protein family signature. 873 892 IPR003960 GO:0005524|GO:0016887
Lja3g0326 1026 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1021 - -
Lja3g0326 1026 Gene3D - 729 1004 IPR027417 -
Lja3g0326 1026 Pfam AAA+ lid domain 923 959 IPR041569 -
Lja3g0326 1026 MobiDBLite consensus disorder prediction 84 123 - -
Lja3g0326 1026 MobiDBLite consensus disorder prediction 268 312 - -
Lja3g0326 1026 Pfam ATPase family associated with various cellular activities (AAA) 770 900 IPR003959 GO:0005524|GO:0016887
Lja3g0326 1026 SMART AAA_5 766 903 IPR003593 -
Lja3g0326 1026 CDD AAA 764 901 - -
Lja3g0326 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 983 IPR027417 -
Lja3g0326 1026 MobiDBLite consensus disorder prediction 342 364 - -
Lja3g0326 1026 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1021 - -
Lja3g0326 1026 MobiDBLite consensus disorder prediction 268 301 - -
Lja3g0326 1026 Gene3D - 902 987 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0326 Lja-Chr3 3336528 3354753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0326 764 965 Calmodulin-binding Proteins AT3G56690 36.058 1.08e-32 135