Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0325 ATGCCTAAGTCAAGCAAGAAATCTGCCACCAAGGTTGAAGCTGCTGCTCCTGTAGCTGCGGCGCCCAAGTCTGCTAAGAAGGCCAAGAGGGCTGCTGAAGATGAGGTTGAGAAGCAAGTGAGTGCTAAGAAGCAGAAGATAGCTGAGGTTGCTGCAAAGCAAAAGAAGGAAACAAAGTTGCAGAAGGTTAAGAAGGAAAGTAGTTCAGATGATGATTCTTCATCTGAAGATGAGAAACCTGCACCCAAGGTTGCTCCTCTGAAGACCTCTGTGAAGAATGGTACTACCCCAGCAAAGAAAGCCAAGCCAGCTCCCAGCTCAAGTTCTTCTGATGAAGACTCCTCTGATGAAGAAGAAGAAGTGATTGCAAAGAAGCCTACCAAAGTAGTGGTTCCAAAGAAGGAGGAAAGTAGTTCAGATGAAGATTCTTCATCAGATGAAGATTCTTCATCTGAATCTGATGATGAGAAACCCGCTGCAAAAGTTGCTGTTCCTGCTAAAAAGGCACCTGCTAAGAATGGCTCTGTGACTGCCCCGGCAAAGAAAGCCCAGCCTGCTCCCAGCTCAAGTTCTGAATCAGAGGATGATGACTCCTCTGAGGAGGATGAACCGAGTGCCAAACAACCTAAGAAAGAAGTTGCTGTGAAACCAGCAGTGCAAAAGAAAAAGGAGGAAAGCAGTTCTGATGATTCGTCCTCAGAGTCGGAAGATGAGAAACCTGCAGTGAAAGTGTCAGCTCCTTCCAAGGTTGTCCCTGCAGCAGTCAAGAATGGGGCTGCAGACTCTGATAGTTCTGATTCTGATTCCTCCTCTGATGAAGATGACGACAAGAAAAAACCTGCCACTAAGGTTGCCAAAAAACTGCCTGCAGCTGCTCCAATTAAGAAGGTTGAGAAAAGTGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGAAAATGATTCAAAGCCTGCCACAACTACTGTGGCCAAGCCTTCTGCTGTTAAGAAGTCAGCTAGTAGTGATTCAGATGATGAGGACTCATCTGACAGCGACTCTGAGGTTAAAAAGGATAAGATGGATGTGGATGAGAGCGACAGTTCAGAGGATAGTGATGAAGAAGATGAGAAATCCACCAAAACACCCCAGAAAAAAGTTAAAGATGTTGAGATGGTTGATGCCTCATCTGGAAAGAATGCTCCTAAAACCCCAGCTGCGCAGACAGAAAACGAAGGGTCAAAGACACTTTTTGTTGGGAACTTGTCATTTAGTGTGCAGCGATCTGATGTGGAAAATTTCTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGTCTCGCAACAGATGAAGATGGCAGATTTAAGGGCTTTGGACATGTTGAGTTTGCAACAGCAGCTGCAGCCCAGAGTGCTCTTGAGTATAATGGGTCAGAACTGCTGCAACGTCCTGTTCGGCTTGATTTAGCTCGGGAAAGGGGTGCATATACCCCTAACAGTGGCGCTGCAAACAACTCATTCCAGAAGGGTGGAAGAGGCCAGTCTCAAACTGTATTTGTGAGGGGCTTTGATAAATTCCAAGGGGAAGATGATATAAAATCTAGTCTGCAGGAGCATTTTGGTTCTTGTGGGGAAATTACTAGGATATCAGTTCCTAAGGATTTTGAATCTGGGAATGTTAAGGGGTTTGCTTATTTGGACTTCTCTGACACTAATAGTGTGAATAAAGCTCTAGAACTTCATGATAGTGATCTTGGAGGTTTTACATTGGCAGTAGATGAAGCTAAACCTAGAGATAATCAAGGTTCTGGCGGTAGAAGTGGAGGTGGAAGAAGTGGTGGCGGACGTGGAGGCCGATTTGACAGTGGACGTGGTGGTGGCAGAGGCCGGTTTGGTAGCGGTGGACGTGGTGGGGACAGAGGTGGCCGAGGTGGAAGAGGTGGCGGTGGAAGGGGTGGTCGTGGAACACCCTTAAGAGCGGAAGGTAAGAAGACTACTTTTGCTGATGAGGACTAG 1995 0.4632 MPKSSKKSATKVEAAAPVAAAPKSAKKAKRAAEDEVEKQVSAKKQKIAEVAAKQKKETKLQKVKKESSSDDDSSSEDEKPAPKVAPLKTSVKNGTTPAKKAKPAPSSSSSDEDSSDEEEEVIAKKPTKVVVPKKEESSSDEDSSSDEDSSSESDDEKPAAKVAVPAKKAPAKNGSVTAPAKKAQPAPSSSSESEDDDSSEEDEPSAKQPKKEVAVKPAVQKKKEESSSDDSSSESEDEKPAVKVSAPSKVVPAAVKNGAADSDSSDSDSSSDEDDDKKKPATKVAKKLPAAAPIKKVEKSESSDDESSESSDEENDSKPATTTVAKPSAVKKSASSDSDDEDSSDSDSEVKKDKMDVDESDSSEDSDEEDEKSTKTPQKKVKDVEMVDASSGKNAPKTPAAQTENEGSKTLFVGNLSFSVQRSDVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATAAAAQSALEYNGSELLQRPVRLDLARERGAYTPNSGAANNSFQKGGRGQSQTVFVRGFDKFQGEDDIKSSLQEHFGSCGEITRISVPKDFESGNVKGFAYLDFSDTNSVNKALELHDSDLGGFTLAVDEAKPRDNQGSGGRSGGGRSGGGRGGRFDSGRGGGRGRFGSGGRGGDRGGRGGRGGGGRGGRGTPLRAEGKKTTFADED* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0325 664 MobiDBLite consensus disorder prediction 369 387 - -
Lja3g0325 664 MobiDBLite consensus disorder prediction 585 664 - -
Lja3g0325 664 Gene3D - 329 493 IPR012677 -
Lja3g0325 664 MobiDBLite consensus disorder prediction 333 359 - -
Lja3g0325 664 SUPERFAMILY RNA-binding domain, RBD 508 622 IPR035979 GO:0003676
Lja3g0325 664 PANTHER BNAA08G02930D PROTEIN 249 628 - -
Lja3g0325 664 MobiDBLite consensus disorder prediction 1 407 - -
Lja3g0325 664 Gene3D - 496 625 IPR012677 -
Lja3g0325 664 MobiDBLite consensus disorder prediction 119 140 - -
Lja3g0325 664 MobiDBLite consensus disorder prediction 26 83 - -
Lja3g0325 664 CDD RRM2_NUCLs 510 588 IPR034350 -
Lja3g0325 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 590 IPR000504 GO:0003723
Lja3g0325 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 478 IPR000504 GO:0003723
Lja3g0325 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 583 IPR000504 GO:0003723
Lja3g0325 664 MobiDBLite consensus disorder prediction 317 332 - -
Lja3g0325 664 SUPERFAMILY RNA-binding domain, RBD 401 506 IPR035979 GO:0003676
Lja3g0325 664 MobiDBLite consensus disorder prediction 203 243 - -
Lja3g0325 664 SMART rrm1_1 510 586 IPR000504 GO:0003723
Lja3g0325 664 SMART rrm1_1 410 481 IPR000504 GO:0003723
Lja3g0325 664 MobiDBLite consensus disorder prediction 89 110 - -
Lja3g0325 664 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 249 628 - -
Lja3g0325 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 409 485 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0325 Lja-Chr3 3329033 3334862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0325 395 583 Eukaryotic Initiation Factors Gene Family AT4G34110 29.688 2.24e-10 62.0