Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0300 ATGGCTTTGTGTTCAGTTATTTCCAATCTTGTTCTTCTACATGTTTTGCTTCTTATCTGTTTTTCTACCAAAGAAGCTTTTGGTGTGTCAAAAGTTTATTTAAGTAGAGAGGTAAAAGCAGAGCAAGAAGCAGATAGAGTGTATGGACTACCAGGGCAGCCTGAGGTGAAGTTCAATCAATATTCTGGTTATGTCACAGTCAATGAAACTCATGGAAGAGCACTGTTCTATTGGTTCTTTGAGGCAGCTGATAAACCACAAGAAAAACCTCTTCTCCTTTGGCTCAATGGAGGCCCAGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCCCCAGGACAGTTTCGAACCAAAGTTAAAGTTGAACCCTTATTCTTGGAACAAAGCTGCAAATCTTTTGTTTCTGGAATCCCCTTTTGGAGTGGGATTCTCCTACACCAACACCAGCAGTGACATGAGTGAGCTTGGTGACACCATTGCTGCTAAGGATGCACACACCTTTCTCATCAATTGGTTTAGGAGATTTCCACAATTCAGATCACACAAGTTCTACATTTCTGGTGAAAGCTATGCAGGGCACTATGTTCCCCAACTTTCTGAGCTCATTTTTGACAACAATCGTAATGCTTCCAATAAAGACTACATTAACTTCAAGGGGTTCATGATTGGAAATGCACTAATGGATGATGAAACAGATCAAAAGGGTATGATAGACTATGCATGGGATCATGCTGTGATATCTGATGCTTTATACCACAACATCACAACCACATGCAATTTCAGCAACCCAACAAGTGAATGCAATGCTGAACTCAATAAGTACTTCAGTGTCTATAGCATTATTGACATGTATAGCTTGTACACTCCCAGGTGTTTCAGCAACAGCAGTGAAACTGTAACCCCTGCAATCAAAGGCGTAACTCCTCAGTCCTTTTCCAAATTTGGTATGAGGCTTAGAAAACCAGCTGGATATGATCCCTGTGCATCGGATCATACTTATGATTATCTAAATAGGCCAGAAGTTCAAAAGGCACTGCATGCCAATGTCACCAAAATTCCCTATCCATGGTCTCACTGCAGCGACAATGTCAGCAATTTTTGGAATGTCGCACCACAATCCACCCTCCCGGTCATTAAGAAGCTTATTGCTGGTGGTCTTCGCGTATGGGTTTACAGTGGAGATACCGATGGGAGAATTCCTGTGACTTCAACAAGATACACATTAAAAAAATTAGGGCTCAAAATTGTAGAAGATTGGACTCCTTGGTATACTAGCCGGCAGGTGGGAGGATGGACCGTTGAATATGATGGGCTGACTTTTGTGACCATTAGAGGTGCTGGTCATCAAGTTCCAACTTTTGCTCCCAAGCAAGCTCTCCAGCTAATTCGGCACTTCTTAGTCGATAAGAAATTACCACAACACCCAATTTAA 1449 0.421 MALCSVISNLVLLHVLLLICFSTKEAFGVSKVYLSREVKAEQEADRVYGLPGQPEVKFNQYSGYVTVNETHGRALFYWFFEAADKPQEKPLLLWLNGGPGCSSIGYGEAEELGPFFPQDSFEPKLKLNPYSWNKAANLLFLESPFGVGFSYTNTSSDMSELGDTIAAKDAHTFLINWFRRFPQFRSHKFYISGESYAGHYVPQLSELIFDNNRNASNKDYINFKGFMIGNALMDDETDQKGMIDYAWDHAVISDALYHNITTTCNFSNPTSECNAELNKYFSVYSIIDMYSLYTPRCFSNSSETVTPAIKGVTPQSFSKFGMRLRKPAGYDPCASDHTYDYLNRPEVQKALHANVTKIPYPWSHCSDNVSNFWNVAPQSTLPVIKKLIAGGLRVWVYSGDTDGRIPVTSTRYTLKKLGLKIVEDWTPWYTSRQVGGWTVEYDGLTFVTIRGAGHQVPTFAPKQALQLIRHFLVDKKLPQHPI* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0300 482 Gene3D - 380 473 - -
Lja3g0300 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 16 481 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Lja3g0300 482 Gene3D - 333 369 - -
Lja3g0300 482 ProSitePatterns Serine carboxypeptidases, histidine active site. 444 461 IPR033124 GO:0004185
Lja3g0300 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 SUPERFAMILY alpha/beta-Hydrolases 38 478 IPR029058 -
Lja3g0300 482 PANTHER CARBOXYPEPTIDASE 16 481 - -
Lja3g0300 482 Pfam Serine carboxypeptidase 52 472 IPR001563 GO:0004185|GO:0006508
Lja3g0300 482 Gene3D alpha/beta hydrolase 41 299 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0300 Lja-Chr3 3123590 3131300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0300 341 477 Calmodulin-binding Proteins AT2G22960 26.812 9.72e-13 65.1