Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0292 ATGGATGCACCAAAAGTTGCCAGAACAAGGAAAACAAAGGTTAAGAATTCAACTTCAAGGCCAGAAACCAGACATGTCTCAAGCAAAGTTGGGAAATTTGATCTCACTGATCTACAATGGACCAATCAAATTCCACAGTGTCCAGTGTACCACCCATCAGAACAGGAGTTTCAGGATCCTTTTGCATATCTACAGATGATTGCTCCAGAGGCATCTAAATTTGGTATATGCAAAATAGTTTCTCCTATAAGTGCCTCTATTCCTGCTGCTGTTGTATTAACAAAAGAGAAAAAGGACTTCAAGTTTAAGACTAATGTGCAGCCTCTTCGGCTTTCTGATTGGAATGAGAAAGATATAATAACCTTTTCCATGAGAAAAAGAAAATACAGCTATCATGAATTTGAGGCTCTGGCAAACAGTGCTTGTCTGAGTAGATTTTACAGTTCTGGAGGTCTTTCATCTTCAGATGTGGAAAAGGAGTTCTGGCGTGTGATGGATTTTGGAGAGAAGGGTAAGATTGAGTATGGAGTCAATATTGAGGGTAGTGCCTTTTCATGTGATCCTCATGACAAGCTTGGAAAAAGCAAATGGAATCTGAAGAATTTCTCACGGCTGCCACAATCCACATTGCGCTTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTATACAGCATAAATTATCATCATTCAGGTGCAAACAAAATTTGGTACGGTGTGCCTGCCCATGAGGCCTCTCAATTTGAAAATACTGTCTTACATCATGTGTATGGCAATAAAGTCTCATCAAAACTTGGAGAAGATGGTTCTTTCCAACTTCTTGCACATAAAACAACCATGTTCCCTCCAATTATCTTGCTGAAAAATGATGTGACAGTTTACAAGGCTGTTCAGAAGCCAGGAGAATTTGTGATCACCTTTCCTAGAGCATATCATGCTGGATTCAGTACTGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGTGATTGGTTTCCATTTGGGGCTGCAGCTAGTAAGCGTTATGCACATCTCAGAATGCTTCCCATGATTCCATATGAGGAACTTCTTTGTAAAGAGGCTATGCAGATTCACAAGTTCTTAAAAGTCAGAAAGTGTTCAATTTCTTCAAATACCATATCTACTCTGATATGCTGCCACTGCCTCAGAGATTGTTATGTAGCATACATGTTGTGCAAGCACTGCTATTCTTATCCAATTTGCCTTTGCTGCCATGACATGGCATCAAAGAGGTGCTCCTGTGGGAGAAAATACACTATTTTTAAGAGGAGTGACATGTTAGCCATGGAGGATGCTGCCAAAAAATTTGAGAAGGAAAAAGAAATCCATTTGAAATAA 1422 0.3952 MDAPKVARTRKTKVKNSTSRPETRHVSSKVGKFDLTDLQWTNQIPQCPVYHPSEQEFQDPFAYLQMIAPEASKFGICKIVSPISASIPAAVVLTKEKKDFKFKTNVQPLRLSDWNEKDIITFSMRKRKYSYHEFEALANSACLSRFYSSGGLSSSDVEKEFWRVMDFGEKGKIEYGVNIEGSAFSCDPHDKLGKSKWNLKNFSRLPQSTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKIWYGVPAHEASQFENTVLHHVYGNKVSSKLGEDGSFQLLAHKTTMFPPIILLKNDVTVYKAVQKPGEFVITFPRAYHAGFSTGFNCGEAVNFAIGDWFPFGAAASKRYAHLRMLPMIPYEELLCKEAMQIHKFLKVRKCSISSNTISTLICCHCLRDCYVAYMLCKHCYSYPICLCCHDMASKRCSCGRKYTIFKRSDMLAMEDAAKKFEKEKEIHLK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0292 473 ProSiteProfiles JmjC domain profile. 194 364 IPR003347 -
Lja3g0292 473 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 390 470 - -
Lja3g0292 473 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 17 393 - -
Lja3g0292 473 SMART JmjN_1 46 87 IPR003349 -
Lja3g0292 473 Pfam JmjC domain, hydroxylase 224 347 IPR003347 -
Lja3g0292 473 Pfam jmjN domain 48 80 IPR003349 -
Lja3g0292 473 ProSiteProfiles JmjN domain profile. 47 88 IPR003349 -
Lja3g0292 473 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g0292 473 PANTHER LYSINE-SPECIFIC DEMETHYLASE 390 470 - -
Lja3g0292 473 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 393 - -
Lja3g0292 473 SMART cupin_9 194 364 IPR003347 -
Lja3g0292 473 SUPERFAMILY Clavaminate synthase-like 185 384 - -
Lja3g0292 473 Gene3D Cupin 47 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0292 Lja-Chr3 3003475 3006878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0292 44 469 JUMONJI Transcription Factor Family AT2G34880 30.624 8.86e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja3g0292 JmjC 4.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0292 - - ahf:112732604 670.618