Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0283 ATGGATTGTACAGCTGCAAGAAAGACGCAAAAGGCTGACAGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGTAACACTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACTATTCAATTGCTGAAGGACCTTACTTCTCAAGTCGGTAAACTCAAAGATGAATATACTATGCTAAATGAAGAATCTCGCGAGTTGGCCCAAGAGAAAAATGATCTTAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAACTTGAACAATCAGTATCAGCAGCAACTCAGGAGTATCTACCCGTGGACTGCAATGGATCCTTCAGTTATGATGGCTCCTCCTCCATCATATCCATATCCGGTACCAATGGCAGTACCTCCTGGTCCGATTCCTATGCAACCGTACCCTTTCTATGCTAATCAACATCCTGCAGTCATGCCTAACCCCTGCTCAACATTTGTTCCTTATTTAGCCCCCAATACCCTTGTTGAACAGCAATCTACCCATTACGTATCCCCTCCACTTCATCCAGGTAGTCGGTCCAATGTGTCAGGAAAACAAAACTCCAAAAACAAATCATCCAGGGAGAGCAAGGCTGATAAAAATGAAGATTCAACTGATGTCACTACAGACCTGGAGCTGAAGACACCCGGGTCATCAGCAGATCAGGTTTTGTCATCCGGAGAAAGAAAATCCAGCAAGTTGCCAAGGAAGGATAGCAGTTTCACAGATGGTAGTTCATTTGGTAGGTGTTCTTCATCTCATAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTTGGGAGCAAGAAGTCTAATGAATGA 852 0.4331 MDCTAARKTQKADREKLRRDRLNEQFVELGNTLDPDRPKNDKATILGDTIQLLKDLTSQVGKLKDEYTMLNEESRELAQEKNDLREEKASLKSDIENLNNQYQQQLRSIYPWTAMDPSVMMAPPPSYPYPVPMAVPPGPIPMQPYPFYANQHPAVMPNPCSTFVPYLAPNTLVEQQSTHYVSPPLHPGSRSNVSGKQNSKNKSSRESKADKNEDSTDVTTDLELKTPGSSADQVLSSGERKSSKLPRKDSSFTDGSSFGRCSSSHSVQDSSSSSVVGSKKSNE* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0283 283 MobiDBLite consensus disorder prediction 178 200 - -
Lja3g0283 283 Coils Coil 5 25 - -
Lja3g0283 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Lja3g0283 283 PANTHER TRANSCRIPTION FACTOR BHLH121 1 282 - -
Lja3g0283 283 SMART finulus 12 62 IPR011598 GO:0046983
Lja3g0283 283 Coils Coil 53 108 - -
Lja3g0283 283 Gene3D - 5 86 IPR036638 GO:0046983
Lja3g0283 283 CDD bHLH_AtILR3_like 11 85 - -
Lja3g0283 283 MobiDBLite consensus disorder prediction 178 283 - -
Lja3g0283 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Lja3g0283 283 MobiDBLite consensus disorder prediction 249 283 - -
Lja3g0283 283 MobiDBLite consensus disorder prediction 201 220 - -
Lja3g0283 283 MobiDBLite consensus disorder prediction 221 240 - -
Lja3g0283 283 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Lja3g0283 283 PANTHER TRANSCRIPTION FACTOR BHLH121 1 282 IPR044579 GO:0003700|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0283 Lja-Chr3 2836188 2839779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0283 4 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.681 1.25e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g0283 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0283 - - cam:101491902 420.624