Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0275 ATGGATCCAACTGATTGCAGAGTAGTTGACATTGATGATGCAAGGTGCAGCATGGTTGACAAGAAGTCTCCCAATTTTCTTGCTTCCATTGGTGCTCATGAATTTTACTCAATTGAGATGTGGAAAGCAGCGCTGACAGAGTTAATGACAAGTGCTTGTCTAATGTTCACTCTGATAAGTACAATTATTGCGTGCCTGGATTCACATGAGGTTGATCCAAAGCTTATTGTCCCCTTTGCGGTCTTTGTCATCACCTTCTTGTTTCTTATGGTGGCGGCGCCGCTTTCCGGTGGACTAATCAGCCCTGTTTTCACATTCATTGCTGCTTTAAAAGGTCTTGTGACACTTGCTCGTGCTCTTATCTATGTCTTAGCACAGTGCATTGGCTCGATCATCGGTTTCTACATGCTCAAGTCTGTGATGGACCCAAAATTAGTACACACATATTCATTAGGAGGCTGTTCCATTGGTGAAGATGGAGTTAGTATTGGTTCTAGTTTACAGCAACATGCTGGTGTTTTGTTGGTGGAATTTGCTTGCACGTTTGTGGTTTTGTTTGTGGGTATCACAGTGGCATTTGACAAGAAAAGGTCCAAGGAGTTGGGGTTGCCAATGGTGTGTGTGGTGGTATCTGCTTCTGTAGCACTAGCAGTGTTTGTGTCCATAACTGTGACTGGAAGGGCTGGTTATGCAGGTGTGGGGATAAACCCAGGAAGATGCTTAGGCCCAGCACTGCTTCATGGAGGCTCACTATGGAGTGGGCATTGGGTTTTCTGGGTTGGGCCTTTCTTGGCCTGTATAATCTATTATGGCGTCTCTGTGAACATGCCAAAGGAGAAATTTGAGTGGGTGGATGGGGAATATGATATCTTAACGTTGGCTTTGGGTCATAGGAGGATTGTGTCTAGTAATGCTGTTTGA 921 0.4484 MDPTDCRVVDIDDARCSMVDKKSPNFLASIGAHEFYSIEMWKAALTELMTSACLMFTLISTIIACLDSHEVDPKLIVPFAVFVITFLFLMVAAPLSGGLISPVFTFIAALKGLVTLARALIYVLAQCIGSIIGFYMLKSVMDPKLVHTYSLGGCSIGEDGVSIGSSLQQHAGVLLVEFACTFVVLFVGITVAFDKKRSKELGLPMVCVVVSASVALAVFVSITVTGRAGYAGVGINPGRCLGPALLHGGSLWSGHWVFWVGPFLACIIYYGVSVNMPKEKFEWVDGEYDILTLALGHRRIVSSNAV* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0275 306 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 SUPERFAMILY Aquaporin-like 38 269 IPR023271 -
Lja3g0275 306 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 20 302 - -
Lja3g0275 306 Pfam Major intrinsic protein 36 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0275 306 Gene3D Glycerol uptake facilitator protein. 28 281 IPR023271 -
Lja3g0275 306 PANTHER AQUAPORIN-LIKE 20 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0275 Lja-Chr3 2771465 2772941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0275 12 268 Major Intrinsic Protein MIP AT3G54820 28.205 3.31e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0275 K09866 - gmx:100797262 406.757