Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0271 ATGGAAGCTGTTTTCCTCACCAAACCTTCTTCTTCTTCTCACCTCAAATTCAAACCACCTCCAAACCCCAACTTCCTCTTTCCCCACCACCGCCAATCTCTCCCCATCCGCCGCCGCAAACCCCTTCACTTCCCCGCCATCTCCGCCGCACTCCAAAACCAGCAGGAAGCCCCCAATGACACTGCTCAAGAAGATGAATCCTACGGCGAAGTCAAACGAATCATCGGCAGCAGAGCCCTTCCCGACGCCACCGCCATGGAGTATCTCATCGAGTGGAAAGACGGCCACGCGCCGTCCTGGGTCCCCGCTGATTTCATCGCAAACGACGTCCTCGCCGAGTACGAAACCCCCTGGTGGACCGCCGCAAGGAAAGCCGACGAGGCCGCGCTTAAAAACATCCTAGACACCGGCGATGACCGCGACGTCGACGCTGTTGACACCGAAGGCCGCACCGCACTCCTCTTCGTCGCTGGACTCGGCTCAGAGCCCTGCGTGAAGGTGCTAGCAGAAGCCGGCGCGAACATCGACCACCGCGACAACGCCGGTGGGATGGCGGCGCTGCACATGGCGGCGGGGTATGTAAGGCCTGGCGTGGCGAAGCTGCTGCTGGAGCTGGGCGCGGATCCGGAGGTGGAGGATAAACGCGGGAGGACGGCGTTGGATCTGGCGAGGGAGCTGCTGAATGCGACGCCGAAGGGGAACCCGATGCAATTTGGGCGGAGAGTGGGGCTGGAAGGGGTGGTTAGGGTTTTGGAAGGGGCGGTGTTCGAGTACGCGGAGGTGGAGGAGATATTGGAGCGGAGGGGGAAGGGTGAGAATTTGGAGTATCTCGTGCGGTGGAAGGACGGTGGTGGAAACGAGTGGGTGAATGCGAGGTTTGTGGCGGAGGATCTGGTGAGGGATTACGAGGCGGGGCTGGAGTACGCGGTGGCGGAGGCGGTGGTTGGCCGGAGAGTTGGGGATGAGGGGAAGTTGGAGCTGTTGGTTAAGTGGGTTGATTTGGAACAGCCCACTTGGGAGCCCGAGGAGAATGTGGATCCTGAGCTTGTTAAGCTCTATGAGCAAAGTAACAATCAAGCCCAGCCCAGTAGTAATGGGCCTGCTTCGAATCAGGATGGCCCAGAAACTTTGTAA 1134 0.5979 MEAVFLTKPSSSSHLKFKPPPNPNFLFPHHRQSLPIRRRKPLHFPAISAALQNQQEAPNDTAQEDESYGEVKRIIGSRALPDATAMEYLIEWKDGHAPSWVPADFIANDVLAEYETPWWTAARKADEAALKNILDTGDDRDVDAVDTEGRTALLFVAGLGSEPCVKVLAEAGANIDHRDNAGGMAALHMAAGYVRPGVAKLLLELGADPEVEDKRGRTALDLARELLNATPKGNPMQFGRRVGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGGGNEWVNARFVAEDLVRDYEAGLEYAVAEAVVGRRVGDEGKLELLVKWVDLEQPTWEPEENVDPELVKLYEQSNNQAQPSSNGPASNQDGPETL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0271 377 Pfam Ankyrin repeats (many copies) 168 223 IPR002110 GO:0005515
Lja3g0271 377 Gene3D - 65 112 - -
Lja3g0271 377 Gene3D - 255 304 - -
Lja3g0271 377 Gene3D - 113 254 IPR036770 -
Lja3g0271 377 PANTHER HOMEOBOX PROTEIN WARIAI 1 360 - -
Lja3g0271 377 SUPERFAMILY Ankyrin repeat 112 225 IPR036770 -
Lja3g0271 377 MobiDBLite consensus disorder prediction 340 377 - -
Lja3g0271 377 MobiDBLite consensus disorder prediction 1 18 - -
Lja3g0271 377 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
Lja3g0271 377 SUPERFAMILY Chromo domain-like 257 304 IPR016197 -
Lja3g0271 377 SUPERFAMILY Chromo domain-like 307 360 IPR016197 -
Lja3g0271 377 SMART chromo_7 308 358 IPR000953 -
Lja3g0271 377 SMART chromo_7 257 307 IPR000953 -
Lja3g0271 377 SMART chromo_7 67 119 IPR000953 -
Lja3g0271 377 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Lja3g0271 377 ProSiteProfiles Chromo and chromo shadow domain profile. 309 365 IPR000953 -
Lja3g0271 377 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Lja3g0271 377 MobiDBLite consensus disorder prediction 351 377 - -
Lja3g0271 377 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g0271 377 CDD CD3_cpSRP43_like 306 354 - -
Lja3g0271 377 Pfam Chromo (CHRromatin Organisation MOdifier) domain 311 355 IPR023780 -
Lja3g0271 377 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 360 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Lja3g0271 377 ProSiteProfiles Ankyrin repeat region circular profile. 182 214 - -
Lja3g0271 377 Gene3D - 305 357 - -
Lja3g0271 377 SUPERFAMILY Chromo domain-like 64 118 IPR016197 -
Lja3g0271 377 SMART ANK_2a 182 211 IPR002110 GO:0005515
Lja3g0271 377 SMART ANK_2a 148 177 IPR002110 GO:0005515
Lja3g0271 377 SMART ANK_2a 113 142 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0271 111 223 CAMTA Transcription Factor Family AT5G09410 36.975 2.10e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0271 K12271 - gmx:100818382 552.747