Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g0268 | ATGATCAATGCAAAAAGGCTAATGGAAATGGCAAGAAAGTGGCAGAAAATGGCAGCAGGGAAACGCAAGAGAATTTCATACCCGAGACACGAAGTGAACACGCATTCTAATTCAGCAACAAACAAGGGTCACTTTGTTGTTTACAGCATCGATCACAAGCGATTTGTTGTTCCCCTAAAGTTTCTTAGCACAAAAATCTTCAGAGAGCTTCTAAAATGGTCAGAGGAAGAGTTTGGATTACCTGCAAATGGACCTATCATGTTACCGTGTGATGGTGTTTTCTTGGACTATGTGATTTCTTTAGTTCAAGAATGCATCCCTGAAGATGTGGAGAAGGCTTTGATCACATTCATGGCTGCATGTCACAATGACGCATCATCATCTTCTAATTCTAGGAAATGGCAGAGGCAGTGGGGAAAGACAGAGAAGGGTCAGTTTGTTGTGTACAGCATGGATAAGAAGCGCTTTGTGCTTCCATTGGTGTATTTGAAGAACAACATCTTCAGAGAGCTCTTCAAATTGGCAGAAGAAGAGTTTGGTCACTCTAGCAATGTGCCCCTCACGTTGCCTTGTGATGCCACGGTGATTAAGTATGTGATTACATTGATCCAGAGAAATGTAGCTAAGGATGTGGAGGAAGCAATGTTAATTTCCATTGCTACTTGTCGGTGCCAATCATATTTGCAGGATCTTTATCAAGAAGGAACTAGTTAA | 714 | 0.416 | MINAKRLMEMARKWQKMAAGKRKRISYPRHEVNTHSNSATNKGHFVVYSIDHKRFVVPLKFLSTKIFRELLKWSEEEFGLPANGPIMLPCDGVFLDYVISLVQECIPEDVEKALITFMAACHNDASSSSNSRKWQRQWGKTEKGQFVVYSMDKKRFVLPLVYLKNNIFRELFKLAEEEFGHSSNVPLTLPCDATVIKYVITLIQRNVAKDVEEAMLISIATCRCQSYLQDLYQEGTS* | 238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g0268 | 237 | Pfam | Auxin responsive protein | 12 | 101 | IPR003676 | GO:0009733 | |
| Lja3g0268 | 237 | Pfam | Auxin responsive protein | 133 | 203 | IPR003676 | GO:0009733 | |
| Lja3g0268 | 237 | PANTHER | AUXIN-RESPONSIVE FAMILY PROTEIN | 132 | 233 | IPR003676 | GO:0009733 | |
| Lja3g0268 | 237 | PANTHER | AUXIN-RESPONSIVE PROTEIN SAUR66-LIKE | 1 | 137 | - | - | |
| Lja3g0268 | 237 | PANTHER | AUXIN-RESPONSIVE PROTEIN SAUR66-LIKE | 132 | 233 | - | - | |
| Lja3g0268 | 237 | PANTHER | AUXIN-RESPONSIVE FAMILY PROTEIN | 1 | 137 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g0268 | Lja-Chr3 | 2710935 | 2718536 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g0268 | 147 | 205 | Calmodulin-binding Proteins | AT4G34750 | 33.898 | 1.19e-07 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja3g0268 | - | - | cic:CICLE_v10030357mg | 208.379 |