Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0267 ATGGCTTTCTTTCTCTGCTTCTTCTTCTTCCTTCTTGCTTCATCATCTGCCTCTGCTTGTGATCGCTGCTCGCATCAATCCAAGGCTGCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGATATGACTCTTTGGCACTGGGCTTGAGTGGTGGACACCTTGCAGCTGGTGTTCCTTCCCTCTTCAAAAGTGGGGCTGGCTGTGGTGCTTGCTATCAGCTAAGATGCAAGAACCCAACTCTGTGCAAAAAAGAAGGTGCCAGAGTGGTATTGACTGATCTTAATCCCAATAATCAAACTGAGTTTGTCCTCAGCAGCAGAGCCTTTGTGGCCATGGCTCAGGATGGTAAAGGCCAACAGATTTTGAAGCTTGGCATTGTTGACATTGAATACAAGCGAGTAGCATGTGAATTCAAAAATCAGAACTTGGCTGTTCGAGTAGAAGAATCAAGCAAAAAACCAGATTACTTAGCAATCAAATTTTTGTATCAAGGGGGACAAACAGAGATAGTAGGTGTTGATGTAGCTCAGGTGGGATCTTCAAACTGGAGGTTCATGAGCAGAAACCATGGGGCAGTGTGGGACACAAGCAGGGTCCCTCAAGGTCCATTGCAATTCAGGCTAGTGGTAACAGCAGGGTATGACGGAAAATGGGTTTGGGCCCAGAAGGTTCTTCCTCTTGACTGGAAAAATGGAGTGATATATGACTCTGGTGTGAAGATAACAGAAATTGCACAAGAAGGTTGTTTCCCCTGTGATGATGGAACCTGGTGA 783 0.4598 MAFFLCFFFFLLASSSASACDRCSHQSKAAYFSKASALSSGACGYDSLALGLSGGHLAAGVPSLFKSGAGCGACYQLRCKNPTLCKKEGARVVLTDLNPNNQTEFVLSSRAFVAMAQDGKGQQILKLGIVDIEYKRVACEFKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVGVDVAQVGSSNWRFMSRNHGAVWDTSRVPQGPLQFRLVVTAGYDGKWVWAQKVLPLDWKNGVIYDSGVKITEIAQEGCFPCDDGTW* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0267 260 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Lja3g0267 260 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Lja3g0267 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Lja3g0267 260 Gene3D - 141 244 IPR036749 -
Lja3g0267 260 PANTHER EXPANSIN-LIKE A1-RELATED 5 257 - -
Lja3g0267 260 PANTHER EXPANSIN-B3 5 257 - -
Lja3g0267 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lja3g0267 260 Pfam Lytic transglycolase 58 134 IPR009009 -
Lja3g0267 260 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Lja3g0267 260 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Lja3g0267 260 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Lja3g0267 260 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Lja3g0267 260 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Lja3g0267 260 SUPERFAMILY Barwin-like endoglucanases 10 142 IPR036908 -
Lja3g0267 260 SMART dpbb_1 58 134 IPR007112 -
Lja3g0267 260 Gene3D - 12 140 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0267 Lja-Chr3 2702132 2704948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0267 17 260 Expansin Gene Family AT4G38400 65.447 5.93e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0267 - - gmx:100305884 432.565