Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0265 ATGCTTCAAAGCTTAATCCCTCGTTCCCCTCTCAATTCTTCCAAACCAACCACCATGAAAACCAAGCGCGATGACGGCGGCGGCGGAAGCGATTCCGCCGTCGACGAACACTCCTTCAAGCGGAGAAACTTCTCCGGCGAGAAAGCGATAGAAGAAGGCGAGGCGGCGCATGAGGAGGACCAGGTTCTGCAACCGGCGTCCTCCTCCGGTGAAGAAGAATCCACCGGGCTTAAACTCCTAGGACTTCTACTCCAATGCGCAGAGTGCGTCGCCATGGACAATCTCGACTTCGCGAACGACCTTCTCCCGGAGATTGCAGAGCTTTCTTCACCGTTCGGAACTTCGCCGGAGCGCGTCGGCGCGTACTTCGCGCAGGCTCTACAATCTCGCGTGGTGAGTTCCTGCCTCGGCACCTACTCGCCGCTGATGGCGAAATCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTTCAATCCTACAACTCGGTGTCGCCGCTGGTGAAATTTTCGCACTTCACCGCCAATCAAGCGATCTTCCAGGCGCTAGACGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAGGGGCTTCAATGGCCGGGACTGTTCCACATCCTCGCCTCGCGAGCGAGGAAGATCCGTTCGTTGAGGATCACCGGGTTCGGATCCTCATCGGAGCTGTTAGAATCCACCGGGAGAAGACTCGCCGATTTCGCGAGCTCGCTTGGGCTTCCGTTTGAGTTTCATCCGGTGGAGGGGAAAATCGGGAGCGTGACGGAGCTGAGTCAACTCGGCGTTAGGCCGGGTGAAGCCACGGTGGTGCACTGGATGCACCACTGCTTGTACGACATAACCGGAAGCGATTTAGGGACGTTGAGATTGCTGAGTCAGCTCCGGCCGAAGCTGATCACGACGGTGGAGCAGGACCTCAGCCACGCCGGAAGCTTCCTGGCGAGGTTTGTGGAGGCGCTGCATTACTACAGCGCGTTGTTCGACGCGCTCGGGGATGGATTGGGTGCGGACAGTTTGGAGCGGCACACGGTGGAGCAGCAGCTGCTCGGCTGCGAGATCAGGAATATCGTGGCGGTTGGTGGGCCCAAGAGGACTGGTGAAGTTAAGGTGGAGAGGTGGGGAGATGAGCTGAAACGGGTCGGGTTTCGACCCGTTTCGTTGCGGGGTAACCCGGCTGCTCAGGCGAGTTTGTTGCTGGGAATGTTTCCATGGAGAGGGTACACGCTAGTGGAGGAGAATGGTTCTCTTAAGATTGGTTGGAAGGATCTGTCTTTGTTGATTGCCTCTGCTTGGCAACCGTCCGATTTGATTACTTATCATGATTGA 1350 0.5711 MLQSLIPRSPLNSSKPTTMKTKRDDGGGGSDSAVDEHSFKRRNFSGEKAIEEGEAAHEEDQVLQPASSSGEEESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQSRVVSSCLGTYSPLMAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRARKIRSLRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRPGEATVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRVGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKIGWKDLSLLIASAWQPSDLITYHD* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0265 449 Pfam GRAS domain family 81 440 IPR005202 -
Lja3g0265 449 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 441 IPR005202 -
Lja3g0265 449 MobiDBLite consensus disorder prediction 1 70 - -
Lja3g0265 449 MobiDBLite consensus disorder prediction 1 17 - -
Lja3g0265 449 PANTHER SCARECROW-LIKE PROTEIN 23 46 441 - -
Lja3g0265 449 MobiDBLite consensus disorder prediction 18 59 - -
Lja3g0265 449 ProSiteProfiles GRAS family profile. 70 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0265 Lja-Chr3 2684403 2686294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0265 19 443 GRAS Transcription Factor Family AT5G41920 66.279 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0265 GRAS 3.7e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0265 - - gmx:100816249 753.436