Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0258 ATGGTAACTTCTTCACCCTTGCCATACTTCTCCATGATGTCACTTTCTCCTACAACCTTAGGATCCCCAAACCCCTGGCTTAGAGAGCTGAAATCTGAGGAAAGGGGTTTGTACTTAATCCATTTGTTGCTAACTTGTGCAAACCATGTTGCTGCTGGTAGTCTTGAAAATGCAAACACCACACTTGAGCAGATTTCCATGCTTGCTTCCCCTGATGGGGACACTATGCAGCGAATCGCAGCGTATTTCACTGAAGCGCTTGCCGACCGGATACTTAAAACCTGGCCTGGGCTTCATAGAGCCCTCAACTCAACTAGGATGATCTTGGTTTCTGAGGAAATTCTTGTCCAGAAGCTCTTCTTTGAGCTTTTTCCTTTCCTGAAGGTGGGATTTATTCTGACTAATCAGGCTATCATTGAAGCAATGGAAGGAGAGAAGATGATTCATATAATTGATCTCAATGCTGCTGAATCTTCTCAGTGGATTGCTCTCCTCCAGATATTGAGCGCGCGTCCTGAAGGCCCTCCTCATTTGCGAATCACCGGGGTTAATCAGAAGAAAGAGGTTTTGGATCAGATAGCTCATAAACTTATTGAAGAAGCTGAAAAGTTGGATATACCATTCCAGTTCAATCCTGTGGTTAGCAAATTAGAAAACCTTGATTTCGACAAACTTCGTGTGAAAACTGGGGAGGCACTAGCAATAAGCTCTATTCTCCAATTGCATTCTCTTCTGGCATGGGATGATGAAGCAGTGCAGAGAAAATCTCCTCTTCTGTCAAGAAGCTCAAAAGACATGGTTAATGGTTATAACCCTAGTCCGGACTCAACCTCATCATCACCAGCATCTTTAGCCAATTCAAATTCAATGAATATGGAGAGTTTTCTTAATGCGTTATGGGGATTATCACCAAAGGTCATGGTTGTGACAGAACAAGACTCCAATCATAATGGTTCCACTCTGATGGAGAGGCTGCTAGAATCTCTGTATTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCCCAAGAACCTCCTTGGAGAGAATAAAGGTGGAGAAGATGCATTTTGGTGAGGAAATCAAGAACATCATTGCGTGTGAGGGATTTGAAAGAAAGGAGAGGCATGAAAAGCTGGAAAAATGGTTCCAGAGATTTGATTCAGCTGGGTTTGGTAATGTGCCTTTAAGCTATTTTGGGATGTTGAAAGCAAGGAGGTTACTTCAAAGCTATGGTTGTGAGGGATATAGAATGAGGGAAGAAAATGGTTGTGTAGCAATTTGCTGGCAGGATCGGTCATTGTTTTCAATATCAGCTTGGAGATCTATGAAGTAA 1338 0.4253 MVTSSPLPYFSMMSLSPTTLGSPNPWLRELKSEERGLYLIHLLLTCANHVAAGSLENANTTLEQISMLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRMILVSEEILVQKLFFELFPFLKVGFILTNQAIIEAMEGEKMIHIIDLNAAESSQWIALLQILSARPEGPPHLRITGVNQKKEVLDQIAHKLIEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDEAVQRKSPLLSRSSKDMVNGYNPSPDSTSSSPASLANSNSMNMESFLNALWGLSPKVMVVTEQDSNHNGSTLMERLLESLYSYAALFDCLESTVPRTSLERIKVEKMHFGEEIKNIIACEGFERKERHEKLEKWFQRFDSAGFGNVPLSYFGMLKARRLLQSYGCEGYRMREENGCVAICWQDRSLFSISAWRSMK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0258 445 PANTHER BNAA06G02820D PROTEIN 2 344 IPR030008 GO:0003700|GO:0005634|GO:0009739
Lja3g0258 445 Pfam GRAS domain family 39 442 IPR005202 -
Lja3g0258 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 344 IPR005202 -
Lja3g0258 445 MobiDBLite consensus disorder prediction 263 285 - -
Lja3g0258 445 ProSiteProfiles GRAS family profile. 30 442 IPR005202 -
Lja3g0258 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 349 444 IPR005202 -
Lja3g0258 445 PANTHER BNAA06G02820D PROTEIN 349 444 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0258 Lja-Chr3 2598943 2601277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0258 2 445 GRAS Transcription Factor Family AT1G50420 67.442 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0258 GRAS 1.7e-139 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0258 - - gmx:100814131 736.487