Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0256 ATGGAGTTCGTGGGCAAAACCGTGAAGAAAGAGGTCAAAGGGGTTGGGACTGTTTCTGGAACTGTCAAATCATTCGACCCTTCAACGGGTTTTGTTGAGATCGCTTACGAAAATGGTCATTCTGAGAAGCTTGAATTCTCCGACGTCGCTCCCCTCTTGGAATTTCAACCGGAGGTGGGCAAGGTTAAGCCCAAGGTTGGCCGGAAACCCAAGAAGCGGCGTCGGGTCGAGCGGAAGCAGCGGCAAGGCGCGACGACGGGTTCAGGTAATGCTCTTGCTAGTGATAATTCGGTATCTGAGGGTGATGGGTTTAGTGGGGTGTTGTTGGATGCTGGTGTTTCTGGTAGTGAATTAGGGTGTGTGAATGAGAGTGGCTTGGCTGTTGAAAATGGGAATGGTGGGAATGTTAGTGGTAATGTGAATGGGAGTGTGGAAGAAATTGGGGTTGGAGAGAATTTGAATTTGAATTTGAATGGGGGTGTGTCTGCTAATGGGGATTGTGTTAGAGAAGGGCTTGATTTGAATGGTGAAGTTAATCTGAATAATGGGTGTGGTTCGACTTTTAATGCTGCTGAGGGTAGTTTGGAGAGAAGAGATTGCATTGATCTGAATTTGGTTGTGAATAATGAGGGTGATGTCAATTTCAATGCGGGTTGTTCGGGAGGGGAAGCGTTGCAGGGGGAGGGTAAGTTTGACTTGAATATGGAGGTGTGTGAAGAAGCCAAGGAAGCGCTAGGTGATGCTGATGGAAATGGACATTCTGTGGTAGATGCTAGGATGGGGAAACTCCAAAAGGAAGAGAATAATATTAATTGTAGATCTGTGGAGGATGATGGTGTTCATGGTAATTTAAATCATGTCTCGGATGCTATGAAATTGGGGGAAATTCAGGTTTCAGCTGAGCTTGCAGCTAAAGACTCATCTTTGTGTTTGATTGAGGAAAAGGAAGGTGATGGTGGCAAAGGAGATGCATCAGTGGTTGATTCTCAACAGGTTTCAAATGCTGTTTCTATGGAGGTTCAGCAAATGGATTGCCCTTCTGAAGCTGGTTTTGCTGTAGTTCATGAATACCAAGATGAGCCGGGAAGTCCATGCAAGCAAGGAAGTAGCCGGAGGAAAAGAAGAAAAGTATCAGATAATCTAACAACCACCCCACAGACTGTTATTAGGAGGAGTTCTCGCCGGGCAATAGCTAGAAATCAAGTATCAAGCCCCATATTAGTGCAGGAGACTGATGATCCTTTGTTGTCCTTGGAAACCAGTGCCTTAACAGAAGAAAAACCTTCCATGCCTGGTCCTGAGAAAATCGAGCAATGCAATGTTGTTCCTCTTCCGGAACTGCAATTACCCCCTTCATCTAAAAATTTGAATTTAGATGACGTTCCTGTTCTTGAACTTTTTTCTGTTTATGCTTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGCTGGAGGATCTTGCAGCGGCACTAAAGTCTGAAAGCCCAAGTATATTATTTGATAGCATTCATGTTTCTATTATGCTAACTCTGAGAAAGCATTTGGAACACCTTTCCAATGAGGGTTGCCAGTCTGCATCTGATTGCTTGAGGAATCTTAACTGGGATTTCTTGGACCTGGTTACATGGCCTATGTTCATGGCCGAGTACCTTCTGATTCACGGCTCAGGGTTTAAAACTTGTTTTGATCTCAAGCAGTTGATGTTTAGAACTGACTACTACAAACAACCTGTAGTTTTGAAGGTTGGAATTCTCCAGCACCTGTGTGATGATATGATTGAAGCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGACTAGTGCGGGGTTTGATCAGAATATCTATTTTGACACTTGCAAGAAAAAAAGAGCTGAAATGGATATGTCTGGTGGCTCTTGCTTGACTAAGGACATTGTGGATGATACCACTGACTGGAATAGTGATGAATGCTGCCTCTGCAAGATGGATGGGAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTGGGAATTACAAGTGATGATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATGGGCACAGACAAGGCTTGGATGAAATCCCGAAGGTCTCTTCGAGGAGCAGAGTTATTAGGGATTGATCTTCATGGCCGTCTTTATTTTTACAGCTGTGATTACCTGTTAGTATCAAACTCATCTGATGAGGGTTCCCTTTTCAATTACTACCACAGAAATGATCTACATGTTGTAATTGAAGCTCTGAAGTCCATGGATTCTTCATATAGAGGCATATTAATGGCTATGTACAAGCATTGGAATACGCCACCTGACTTAAGTGCAGGGGCTAGTAACTTGGGAGTCTTTAATCAAAATTCCGGCAAAAACATGCAAATGTTGGGTGAATATTCTGCTATGCATACATCTGTAGCACCTTTTACTTCATCAGATGCATGTATGGACAAGAATCAGGCTGATTATCAAAGACAGTTGGACAAAACTTCAATAGATAGTCCTTGTAATGCTTCAGAAGGGTCAGCTAATACCACCCAAATGAGATCAGGCATCGAGAATGTTCAAATGAATGGGCTTTGTGTTTCCAGTAGATCTGATGAATCCTTGATTCAGTCAGGAATGCCAGAAAAACATCGTCCCATTGGTGGCAGTTCTTTGACATCTTCTAGCTTAGATGGGGGACATAAAATAGACTTGAGGTCTATAGGTGCTAGCCGTACCCCAAATACAGACAATAAGGATATGTCAGAAGCACCTTGTTGGATTGACTACACCAACTATTACAGCTTTGCTCGAATGGCCTCGTTAGTTGCACAGGAGTTAATGTGTAAGTTACCTGAAAAGATCAATAAGAATGTTGCAATGTCTGAGGAAGAAATAATTTCAGACCAAGCTAAGGCCATTATGAAGAAATCTACCAACTTTTGCTGGCCAAGTATTCAAAACCTAAATGCAGCAGCCCAAAAGGAAAAATGTGGATGGTGCATTTCTTGCAAAGGTGTTAATGATGACAGAGATTGCTTGGTTAATTCTGTGGTGAAGCCTGTTTGTGAATTGTCTAAAAGTAATTCAGGTGGTCTTCAACCCATGAGGATCCAGAATGGACATCTTAGGGAGATTATATGTCAGATTTTCTCTCTTGAGGTTCGATTACGTGGGCTTTTGTTGGGTCCATGGTTAAATTTGCATCAAACTAATATTTGGCATAAGGATCTTTTGAAGACATCTGATTTTGCCGCTGTTAAACGGTTATTGCTTCTTCTGGAATCCAATTTGAGGCATCTTGCCTTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTACTACTACGGGATCAGCTACTCATATCGTGGTCAGTTCATCACGCACTTCTTCAAGGCATAGTATTGGAAGGAAAAGGGCTAGGTATTCAGATGTTGAATCCAGCTCATCTTCAAGCACAGCTAGTGGTTTGGGAATGTATTGGTGGAGAGGTGGCAGGCTATCCCGAAAATTGTTTAATTGCAAGGTTTTGCCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTATGAAGATACCGGGCGTTTTATATCTTGAGAATTCAGATTTTGCAAGGAGAAGCAGATATGTTACCTGGCGAGCTGCTGTCGAGATGTCTACAAATGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCATACATAAGGTGGCATGACGTGGAGAATGACCATCCTCTACATGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGTGCACTAACGGGCAATCTGTGAAATACCTCCTTGATTTTGGTAAGAGAAGAGCTATTCCAGATATTGTTAGTAAACATGGATCTTTGTTGGAAGAATCCTCCAGTGATAGGAAAAAATATTGGCTGGATGAGCCTTATGTTCCCTTGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATTGCCCGCAAGTCTGATGATAAGAAACTTGGAAATATTCTCGAGATTGGTAGAATAAAGAGGGTTCCTCAACAAAGGGGATTTTCATATTTGTTTTCTAAAATGGAAAGATCTGATTGTCATCAGTGTGGGCATTGCAAAAAGGATGTTCCAATCAGGGAAGCTGTGAGTTGCCTTTATTGCAAAGGATATTTCCACAAGAGGCATGTCAAGAAATCTGGTGGTACGATAACTGCTGCAAGCACATATTCATGTCACAAATGCCAGGACGGGGTGCTTATAAAGACTAAAACTAATAGAAGGAAAGTTGATTCGAAACTGAAGAAGATTGAATCACAGAAATGTAAAACGATCTCTTTAGTTTGTAAACCGGTGAACCTTAAAGGCACTAAAAAAGCATCAAGTAAGGTGCAACATGTGAGATCTCGAACTAATAAGAAAATCCCATCAAGTATACCTCTTCGTCGTTCTACTAGGAAGGCTAAATCCTTGTATATGAAAAGTCAAATGATTGGAGGACGTAAAAAAGGAACACAGAGTAAAAAGAATGTGGGACGTAAAAAGGGAAAGCAAAGTAAAAACAAGAAGGTGACCTGTCAGAAGTCCATGGAAACTGGCAAATGGAAGAAGTTGGTAGTAACTTCTAAACGTAAGCGAACCGGTTACAGTTACTGGCTTAATGGTCTTTGGCTGTCGAGAAAGCCAAATGATGAACGAGTAATGCTGTTTAAAGAGAAAAAGCATGTTGTCTCTTCCAAAGATTTTTCTGGCTCCCGTGACCGTCCTAAATGCTGCCTTTGCTGTGGAGATGGATGCACGTTAAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGAGATGCATTTGGGCTCACTGTAGAAAATGTAGGACAACTTATTGGATTTAGGTGCCATGTATGTCGTGATAGGGATGCTCCGATCTGCCCCCATATGAACAGTAGTGCATTGTCTCTCCCAAAAAACAATGCTGCTAATGGGTCTGCCGAGGAATTATCTAGTCCTGTTTCTCTCCAACCTGTGAATGAGGATTTGGCAGCATCTTCTTGCACTATTCCTGAGGACGACACTACTTATGTGGACCATGCACCGATACACGCCACAAATCAAAATAGATATAGCTACCGGTATCAAAGACGGCGAAAACCCGATGTGGTCCAATAA 5202 0.4208 MEFVGKTVKKEVKGVGTVSGTVKSFDPSTGFVEIAYENGHSEKLEFSDVAPLLEFQPEVGKVKPKVGRKPKKRRRVERKQRQGATTGSGNALASDNSVSEGDGFSGVLLDAGVSGSELGCVNESGLAVENGNGGNVSGNVNGSVEEIGVGENLNLNLNGGVSANGDCVREGLDLNGEVNLNNGCGSTFNAAEGSLERRDCIDLNLVVNNEGDVNFNAGCSGGEALQGEGKFDLNMEVCEEAKEALGDADGNGHSVVDARMGKLQKEENNINCRSVEDDGVHGNLNHVSDAMKLGEIQVSAELAAKDSSLCLIEEKEGDGGKGDASVVDSQQVSNAVSMEVQQMDCPSEAGFAVVHEYQDEPGSPCKQGSSRRKRRKVSDNLTTTPQTVIRRSSRRAIARNQVSSPILVQETDDPLLSLETSALTEEKPSMPGPEKIEQCNVVPLPELQLPPSSKNLNLDDVPVLELFSVYACLRSFSTLLFLSPFELEDLAAALKSESPSILFDSIHVSIMLTLRKHLEHLSNEGCQSASDCLRNLNWDFLDLVTWPMFMAEYLLIHGSGFKTCFDLKQLMFRTDYYKQPVVLKVGILQHLCDDMIEAEAIRSELNRRSLVTETSAGFDQNIYFDTCKKKRAEMDMSGGSCLTKDIVDDTTDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGITSDDLPEGDWYCPECAMGTDKAWMKSRRSLRGAELLGIDLHGRLYFYSCDYLLVSNSSDEGSLFNYYHRNDLHVVIEALKSMDSSYRGILMAMYKHWNTPPDLSAGASNLGVFNQNSGKNMQMLGEYSAMHTSVAPFTSSDACMDKNQADYQRQLDKTSIDSPCNASEGSANTTQMRSGIENVQMNGLCVSSRSDESLIQSGMPEKHRPIGGSSLTSSSLDGGHKIDLRSIGASRTPNTDNKDMSEAPCWIDYTNYYSFARMASLVAQELMCKLPEKINKNVAMSEEEIISDQAKAIMKKSTNFCWPSIQNLNAAAQKEKCGWCISCKGVNDDRDCLVNSVVKPVCELSKSNSGGLQPMRIQNGHLREIICQIFSLEVRLRGLLLGPWLNLHQTNIWHKDLLKTSDFAAVKRLLLLLESNLRHLAFSADWLKHVDSVTTTGSATHIVVSSSRTSSRHSIGRKRARYSDVESSSSSSTASGLGMYWWRGGRLSRKLFNCKVLPRSLVTKAARQAGCMKIPGVLYLENSDFARRSRYVTWRAAVEMSTNVEQLALQVRELYSYIRWHDVENDHPLHVLDKESRKSVRLFKKVIVRRKCTNGQSVKYLLDFGKRRAIPDIVSKHGSLLEESSSDRKKYWLDEPYVPLHLLKNFEEKRIARKSDDKKLGNILEIGRIKRVPQQRGFSYLFSKMERSDCHQCGHCKKDVPIREAVSCLYCKGYFHKRHVKKSGGTITAASTYSCHKCQDGVLIKTKTNRRKVDSKLKKIESQKCKTISLVCKPVNLKGTKKASSKVQHVRSRTNKKIPSSIPLRRSTRKAKSLYMKSQMIGGRKKGTQSKKNVGRKKGKQSKNKKVTCQKSMETGKWKKLVVTSKRKRTGYSYWLNGLWLSRKPNDERVMLFKEKKHVVSSKDFSGSRDRPKCCLCCGDGCTLNYIACEICGEWFHGDAFGLTVENVGQLIGFRCHVCRDRDAPICPHMNSSALSLPKNNAANGSAEELSSPVSLQPVNEDLAASSCTIPEDDTTYVDHAPIHATNQNRYSYRYQRRRKPDVVQ* 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0256 1733 ProSiteProfiles Zinc finger PHD-type profile. 655 702 IPR019787 -
Lja3g0256 1733 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1673 - -
Lja3g0256 1733 Pfam PHD-finger 658 700 IPR019787 -
Lja3g0256 1733 SUPERFAMILY FYVE/PHD zinc finger 642 700 IPR011011 -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 65 79 - -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 61 98 - -
Lja3g0256 1733 Pfam DDT domain 464 516 IPR018501 -
Lja3g0256 1733 SUPERFAMILY FYVE/PHD zinc finger 1582 1649 IPR011011 -
Lja3g0256 1733 SMART PHD_3 1380 1427 IPR001965 -
Lja3g0256 1733 SMART PHD_3 1602 1648 IPR001965 -
Lja3g0256 1733 SMART PHD_3 657 700 IPR001965 -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 1508 1537 - -
Lja3g0256 1733 CDD PHD1_AIRE 657 699 - -
Lja3g0256 1733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1570 1654 IPR013083 -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 82 98 - -
Lja3g0256 1733 ProSitePatterns Zinc finger PHD-type signature. 658 699 IPR019786 -
Lja3g0256 1733 SMART testlast3 460 520 IPR018501 -
Lja3g0256 1733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 716 IPR013083 -
Lja3g0256 1733 ProSiteProfiles DDT domain profile. 460 520 IPR018501 -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 1517 1533 - -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 886 905 - -
Lja3g0256 1733 MobiDBLite consensus disorder prediction 358 385 - -
Lja3g0256 1733 PANTHER PHD FINGER FAMILY PROTEIN 1 1673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0256 Lja-Chr3 2573452 2593639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0256 1 1662 PHD Transcription Factor Family AT5G12400 41.059 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja3g0256 DDT 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0256 - - gmx:100800973 2296.55