Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0252 ATGGAATCATCCGGCGGTGGCGACCGGTTTTCGAATCCAAACGCGAACGCATCATCGTTCACCTTCACCACCGCACCTTCCGGTTCGGGTCTCTCCAAGCCCCGATTCGTCAAGGTCCGCAAGCACAACAATGCCGCATTCGTCCACGGATCCAACAACAACAAGCCTCTCGCACCTTCCACCTTCGACAAGGGAACAATCATCGCTGATCGGTTAAGGAATCTCAACATCGGAAGCGAGGGTTTCAGCGGCGGCGAGTTTGGTTCTTCCCGCGTTGACGACGGCAGCTTAGAGAAGCTTCTTCCGGAACAGATGAGCAGGTTGAAGGTTGCAACGGATGATGGAGGACGAGGTTTCAATTTTCACGTTGAGTCGGAGCTCGGGAACGAGTTGGAGAAGAAGCTGAGCATTAGAGAAGCTGAGAAGATTGGAGGAGGTAGCAATGCGGTTGCTGAGAACGCTGCAAATGCAGTTATCAACCAAATGAAGAATTTGAATGTGAATGTGAATGAGATGAAGAGTGAAGTTGATGAGGTGACATTGGGAATGAACAAGTTTAACCTGAAGAATGAGGGTAATGCAAGTGGAGGTGGTGGTGGTGGTGATGAAGTTGCTTCAGAGAATCTCAAAGAAGGCATTGGAATGTCGAAAACTGCCGCGTCTGCATCAGCATCATTCTCTGGTGGTGGAGGTTTTCAACCTGATGGGGTGGCCAAGAGCGACGGATTTGTCTTCACGGGAAAATCGGATACTTCTTCAGGGTCATCTTTTGTTGAGTTTAAGATACCTGCACCGAAATTCGGCAAAGAAGGAAAACTAAAGGAAAAAAGTAGTAGTAGATTGAATAAAAATAGAGTAAAACTGAAGCATGGTACCTCAGCCTCAGCTCAACCATGGCATGGACAGGGTATTGCTTTTAAGGGGAGTGTTTCACAAGAAGACTCGCAAGGTTCTTTAGAGGGTTCTCCGATGGAGGTGTCTCCGTATCAGGAAAAACTGGCTGAAAATCGAATGTCAAGGGAAAATTCTGTGGCATCCAATGAGTCGTGTAGTGTTGATAACAACTCTACTGCTAATGATTCATTTATTGCTGATAACAACTCTATGGCTGCTAATGATACATTACCAAGTCCAACAACTTCTAATGATCCCATTGACGAAGATCTAATTGAGGCAACAGAGCACATGAACATAAATGGTAGTGACGTTGCACGCGCAGCAACAAAGAAGGAAAGTTCGGAGTATCATGCTAGTGAAAATATTTGTGTTGGAGACTCAAAAGATGAGTCTATTTCTGGGGTTGAAACGGAAAGCTTCAAGTCTGCTAATGATGAAGTGGATATAACTAGTGATACGGCAGGTACATCAGCTGAAACTGATGCCCATGATAGTTATAGAACATTGCATCTCGGTGGTGCTTTTAGTTCAAGAAATGCATGTGGTTCTGCCTTCACATTTGGTGCTTCTTATTCAGCTGAACCTCAAGTGGCTAGCCCAAAACGCCTTAATAAAAAGAAAAATTGGGTAAATGTTGGTCATGATTCTCACATCTACGCACCAAATGTAAAGGTTCCTTATTCATCATCATCTGTGGCGTTTTCTGGAACACCTTTTATCTCATCGGGGCAAGGTCTAAAAGCCAAAGTATCTTCTCCTCGACCAAAAACAAGGGATTCTGATGTGAGTGAGGAGCAGGGAACAAAGGAGGCTTATGCTTCTGTTTCAGCTGCAACTGTTGTTGCTGAGGAAGCCTGTGAAAAGTGGCGGCTTCGAGGGAACCAAGCCTACAAGAACGGGGATTTGTCTATGGCTGAGAATTATTACAAACAAGGACTTGCTTGTGTATCGAAAAAAGAAGCATCCCGGAGCAGTCTCAGGGCTTTGCTGCTATGTTACAGCAACCTTGCTGCCACACGCATGTCTCTTGGCAGGATGAGGGATGCGCTAGAAGATTGTATGATGGCTGCTGAAATAGATCCAAATTTCCTCAGGGTGCAACTTAGAGCTGCAAATTGTTGCCTTGCTCTGGGAGAAATGGAAGGTGCATCGCATTATTTCAAAATGTGCTTGCAATCAGGAGCTGATGTTTGTGTAGATCGAAAAATCGCTGTGGAAGCCTCCGATGGCTTACAAAAGGCACAGAAAGTATCAGATTTCATCAATCATTCTGCTGAGCTTTTACAAAGAAGAACATCCTCTGATGCAGAGAAAGCATTAGAACATATTAATGAGGCGTTGATGATGAGTAAATACTCCGAAAATTTGCTTGAAATGAAAGCAAAGGCTCTTTTAATGCTGTGTAGATATGAGGAGGTGATTCAGCTGTGTCACGAGACACTTGATTCTGCTGAGAAGAATGCTTGTCCACCGGATGCTGGTTTACAAGTCACAGATCTGAATAAGTCACAACTTTCAAAAGGCTTCTACTTCAGAATATGGCGGTGCTCAATGATGCTTAAATCCTACTTTCACCTAGGAAAACTTGAAGAAGGTCTTTCTTTGCTGGAACAACAAGAGGAAAAGGTGTCTACCATAAGCAAGAGTGGAAGCAAGGTTTTGGATTCACTCATACCGTTAGCTGCCACTGTACGTGAGCTCTTGCATCACAAGACTGCAGGGAATGAAGCATTTCAGGCTGGCAGGCATGCAGAAGCTGTTGAACACTATACATCTGCTTTATCTTGTAATGTGGAATCCCGTCCATTCGCAGCTGTCTGTTATTGCAATCGTGCCGCAGCATATAAAGTATTAGGTCAAATAACCGAGGCCATTGCAGATTGCAGTCTGGCTATAGCTCTTGATGGAAATTATTTGAAGGCACTTTCTAGACGTGCAAGTCTGTATGAGATGATCAGATATTACGACCAAGCAGCCAATGATCTTAGAAGACTTGTCTCTCTTCTCAATAAAGGGATGGAGGATAATGCCAGTCAGCTTGGAATATCTGATAGATCAAGTAGTTATACTAATGATTTGAAACAATATCGTATTCGGCTTTCTGAAATAGAGGAGGAAGCTAGAAAGGAGATCCCGCTTGATATGTACCTTATTTTGGGAGTTGAACCATCTGTTTCAGCATCTGAAATAAAAAAGGCCTATCGGAAAGCTGCACTAAGACATCATCCGGACAAGGCTGGCCAGTCTTTGACTAGAAGTGACAGTGGAGATGATCGGATATGGAAGGTTATTACTGAAGAAGTACATAGAGATGCTGATAGGGTTTTCAAAATAATTGGGGAGGCATATGCTGTCCTGTCTGACCCTTCCAAGAGGGCACGATATGATGCTGAAGAGGAAATGAGGAATTCCCAAAAGAGACGCCATGGGGCTAGAAATAATGCGGATACCCAATTTGATCAAAGCAGTAGGAGACAGTGGAGAGAGGTTTATAGATCATACGGTAATTCATATTATCGAGGTTCTGAACCTGGTCGATCAAGCAGGTAG 3447 0.441 MESSGGGDRFSNPNANASSFTFTTAPSGSGLSKPRFVKVRKHNNAAFVHGSNNNKPLAPSTFDKGTIIADRLRNLNIGSEGFSGGEFGSSRVDDGSLEKLLPEQMSRLKVATDDGGRGFNFHVESELGNELEKKLSIREAEKIGGGSNAVAENAANAVINQMKNLNVNVNEMKSEVDEVTLGMNKFNLKNEGNASGGGGGGDEVASENLKEGIGMSKTAASASASFSGGGGFQPDGVAKSDGFVFTGKSDTSSGSSFVEFKIPAPKFGKEGKLKEKSSSRLNKNRVKLKHGTSASAQPWHGQGIAFKGSVSQEDSQGSLEGSPMEVSPYQEKLAENRMSRENSVASNESCSVDNNSTANDSFIADNNSMAANDTLPSPTTSNDPIDEDLIEATEHMNINGSDVARAATKKESSEYHASENICVGDSKDESISGVETESFKSANDEVDITSDTAGTSAETDAHDSYRTLHLGGAFSSRNACGSAFTFGASYSAEPQVASPKRLNKKKNWVNVGHDSHIYAPNVKVPYSSSSVAFSGTPFISSGQGLKAKVSSPRPKTRDSDVSEEQGTKEAYASVSAATVVAEEACEKWRLRGNQAYKNGDLSMAENYYKQGLACVSKKEASRSSLRALLLCYSNLAATRMSLGRMRDALEDCMMAAEIDPNFLRVQLRAANCCLALGEMEGASHYFKMCLQSGADVCVDRKIAVEASDGLQKAQKVSDFINHSAELLQRRTSSDAEKALEHINEALMMSKYSENLLEMKAKALLMLCRYEEVIQLCHETLDSAEKNACPPDAGLQVTDLNKSQLSKGFYFRIWRCSMMLKSYFHLGKLEEGLSLLEQQEEKVSTISKSGSKVLDSLIPLAATVRELLHHKTAGNEAFQAGRHAEAVEHYTSALSCNVESRPFAAVCYCNRAAAYKVLGQITEAIADCSLAIALDGNYLKALSRRASLYEMIRYYDQAANDLRRLVSLLNKGMEDNASQLGISDRSSSYTNDLKQYRIRLSEIEEEARKEIPLDMYLILGVEPSVSASEIKKAYRKAALRHHPDKAGQSLTRSDSGDDRIWKVITEEVHRDADRVFKIIGEAYAVLSDPSKRARYDAEEEMRNSQKRRHGARNNADTQFDQSSRRQWREVYRSYGNSYYRGSEPGRSSR* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0252 1148 Pfam DnaJ domain 1013 1095 IPR001623 -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 1093 1113 - -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 339 385 - -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 309 323 - -
Lja3g0252 1148 SUPERFAMILY TPR-like 585 691 IPR011990 GO:0005515
Lja3g0252 1148 MobiDBLite consensus disorder prediction 309 328 - -
Lja3g0252 1148 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 1148 - -
Lja3g0252 1148 Gene3D Tetratricopeptide repeat domain 865 982 IPR011990 GO:0005515
Lja3g0252 1148 MobiDBLite consensus disorder prediction 335 385 - -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 1093 1126 - -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0252 1148 Gene3D DnaJ domain 999 1123 IPR036869 -
Lja3g0252 1148 Gene3D Tetratricopeptide repeat domain 584 853 IPR011990 GO:0005515
Lja3g0252 1148 CDD DnaJ 1013 1087 IPR001623 -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 541 567 - -
Lja3g0252 1148 SUPERFAMILY Chaperone J-domain 974 1094 IPR036869 -
Lja3g0252 1148 SMART dnaj_3 1012 1090 IPR001623 -
Lja3g0252 1148 ProSiteProfiles dnaJ domain profile. 1013 1098 IPR001623 -
Lja3g0252 1148 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 1148 - -
Lja3g0252 1148 SUPERFAMILY TPR-like 869 967 IPR011990 GO:0005515
Lja3g0252 1148 ProSitePatterns Nt-dnaJ domain signature. 1075 1094 IPR018253 -
Lja3g0252 1148 Coils Coil 985 1005 - -
Lja3g0252 1148 Coils Coil 148 175 - -
Lja3g0252 1148 PRINTS DnaJ domain signature 1015 1033 IPR001623 -
Lja3g0252 1148 PRINTS DnaJ domain signature 1033 1048 IPR001623 -
Lja3g0252 1148 PRINTS DnaJ domain signature 1070 1090 IPR001623 -
Lja3g0252 1148 SMART tpr_5 866 899 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 663 696 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 629 662 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 904 937 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 585 618 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 753 786 IPR019734 GO:0005515
Lja3g0252 1148 SMART tpr_5 938 971 IPR019734 GO:0005515
Lja3g0252 1148 MobiDBLite consensus disorder prediction 551 565 - -
Lja3g0252 1148 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0252 Lja-Chr3 2542814 2552338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0252 1015 1096 C2H2 Transcription Factor Family AT1G74250 34.146 4.24e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0252 K09527 - gmx:100800435 1370.14