Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0242 ATGGAGATTGAAACTGCTACTGCAGGAGGTGGTGGTGGTGGTAGCTACAAAGATGAGAGTGAGGTGGCAGCATATGGTGGTTTTGATAGGGGCAGCTTCTTGGCATGGGAAGATCTGAGAGTGGTGATTCCAAATTTTGGGAAAGGACCAACTAAGAGGTTGCTTAATGGGCTTAATGGGTTTGCTGAGCCTGGTAGAATCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCCACATTGCTGGATTCTCTAGCAGGTAGACTCTCAAAGAATGTTGTCATGACAGGAAATGTTCTTCTCAATGGGAAGAAACAAACCCTGGGCTGTGGTTTTGTTGCTTATGTAACTCAAGAGGATGTGCTGCTGGGAACTCTCACAGTGAAGGAAACCATATCATATTCAGCGAATCTTCGTCTTCCAACATCAATGACCAAAGATGAAGTTAACAGCATAGTAGATGGAACACTCATAGAAATGGGTCTCCAAGACTGTGCTGATAGATTGATTGGTAACTGGCACTTGAGAGGAATAAGTGGAGGGGAGAAGAAAAGACTTAGCATTGCACTTGAGATCCTCACAAGGCCTCGCTTGCTATTTCTTGATGAACCAACCAGTGGCCTAGACAGTGCCTCAGCATTTTTTGTTGTTCAGACTCTTAGAAATGTTGCTCGTGATGGAAGGACAGTTATCTCTTCCATTCACCAGCCAAGCAGTGAAGTTTTTGCACTCTTTGATGACCTTTACTTGCTATCTGGTGGAGAAACAGTTTATTTTGGAGAAGCAAAAATGGCAGTAGAGTTTTTTGCTGAAGCTGGTTTTCCTTGTCCACGAAAGAAAAATCCTTCTGATCACTTCCTACGATGTATCAATTCTGACTTTGATGTTGTAACAGCTGCACTTAAGGGATCTCAAAGAATTCCTGATGTTCCAAATTCATCAGATCCTTTCCTGAACTTGGCTACAGCAGAGATTAAGGCGAGGCTAGTTGAAAAATATAGGCGTTCAACATATGCCAAAAGGGTCAAAAAAAGAATTCAAGAACTATCTACCAATGAAGGGCTTGAAATTGAGTCAAAAAATGGAAGTCAAGCTACTTGGTGGAAGCAACTCTCCACATTGACAAGGAGATCATTTGTCAACATGAGTAGAGATGTGGGTTACTACTGGTTGAGGATTATAATTTACATTATTGTGTCTATATGTGTTGGAACCATTTATTTTGACATTGGCTATAGCTATACTTCAATCCTAGCCCGGGGTGCTTGTGGTGCATTTATATCAGGATTTATGACATTCATGTCAATTGGAGGCTTTCCATCATTTATTGAAGAAATGAAGGTTTTTTATAGAGAACGGCTTAATGGATATTATGGAGTTGCAGCATATATTCTAGCCAATTTCCTTTCTTCTTTCCCATTCTTGGTTGCTATTGCTCTTACTACTAGCACCATCACTTATAACATGGTGAAATTCCGGCCAGGATTGAGTCACTTTGTCTTTTTCACTCTCAACATCTATAGCTCCATCTCAGTGATTGAGAGCCTCATGATGGTTGTGGCTTCACTTGTTCCAAATTTCCTCATGGGAATTATTACAGGGGCTGGAATCATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGCTGTCTGATCTTCCAAAACCGGTTTGGCGCTACCCAATTTCATATATCAGTTATGGTGCATGGGCAATACAGGGTTCCTACAAGAATGACTTGCTGGGTCTTGAGTTTGATCCTCTGATACCAGGTGACCCAAGATTGACTGGAGAATATGTAATCACACACATGTTGGGCATTGAATTAAAACATTCCAAGTGGATGGACCTAGCAGCTCTATTCATCATTCTTGCATGTTATAGACTTCTGTTCTTCGCTATTCTCAAGTTCAAGGAAAGAGCATCTCCATTATTTCAGTCACTTTATGCCAAGAGAACCATTCAACAGCTTGAAAAAAGACCCTCGTTCAGAAAGATGCCATCTTTTCCTTCCCAAAGGCATCAACCCCTCTACTCACTGTCTTCTCAAGAGGGTCTTGATTCTCCACTCAACTAG 2079 0.4151 MEIETATAGGGGGGSYKDESEVAAYGGFDRGSFLAWEDLRVVIPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKKQTLGCGFVAYVTQEDVLLGTLTVKETISYSANLRLPTSMTKDEVNSIVDGTLIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLYLLSGGETVYFGEAKMAVEFFAEAGFPCPRKKNPSDHFLRCINSDFDVVTAALKGSQRIPDVPNSSDPFLNLATAEIKARLVEKYRRSTYAKRVKKRIQELSTNEGLEIESKNGSQATWWKQLSTLTRRSFVNMSRDVGYYWLRIIIYIIVSICVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTTSTITYNMVKFRPGLSHFVFFTLNIYSSISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGSYKNDLLGLEFDPLIPGDPRLTGEYVITHMLGIELKHSKWMDLAALFIILACYRLLFFAILKFKERASPLFQSLYAKRTIQQLEKRPSFRKMPSFPSQRHQPLYSLSSQEGLDSPLN* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0242 692 MobiDBLite consensus disorder prediction 662 692 - -
Lja3g0242 692 CDD ABCG_EPDR 31 260 - -
Lja3g0242 692 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 31 687 - -
Lja3g0242 692 Pfam ABC-2 type transporter 370 579 IPR013525 GO:0016020|GO:0140359
Lja3g0242 692 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Lja3g0242 692 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 31 687 - -
Lja3g0242 692 SMART AAA_5 64 235 IPR003593 -
Lja3g0242 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 267 IPR027417 -
Lja3g0242 692 Pfam ABC transporter 57 206 IPR003439 GO:0005524
Lja3g0242 692 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 278 IPR003439 GO:0005524
Lja3g0242 692 Gene3D - 35 272 IPR027417 -
Lja3g0242 692 MobiDBLite consensus disorder prediction 669 692 - -
Lja3g0242 692 Pfam ABC-2 type transporter 235 292 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0242 Lja-Chr3 2452134 2461149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0242 50 247 Calmodulin-binding Proteins AT2G36910 30.622 1.75e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0242 K05681 - gmx:100777598 1216.06