Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0241 ATGGAGGAGATAGAGCAAGACACTGCCAATAACAACATTGGTGCTACTGATGACCATGAAATTATGAGAGTTTCAAAACAAGGAAGAGGGATGCATCTTGTGTGGGAAGATTTGAGTGTTGTTATTCCAAATTTTGGTGAAGGACACACCAAGAGGTTGCTTAATGGATTGAGTGGATATGCTGAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTAGCAGGTAGACTCTCTAGAAATGTTATTATGACAGGAAATGTGCTTCTAAATGGAAAAAAGAGGAGATTAGACTATGGGGTTGTAGCTTATGTGACCCAAGAAGACATATTGTTGGGAACACTGACAGTTAGAGAGACAATATCTTACTCAGCAAATCTAAGGCTTCCAGCTACCATGACCAAAGAAGAGGTGAATGATATTGTAGAGGGAACAATTATGGAGATGGGTCTTCAAGATTGTGCTGATAGGCTAATAGGAAACTGGCACTTGAGAGGTATAAGTGGTGGAGAAAAGAAAAGACTGAGCATAGCACTTGAAATCCTCATAAGGCCTTGCCTCTTGTTCCTTGATGAACCTACAAGTGGTTTGGATAGTGCCTCAGCATATTTTGTTGCACAAACTCTGAGAAACATAGCTCATGATGGCAAGACTGTTATCTCTTCTATACATCAACCAAGCAGTGAGGTTTTTGCACTCTTTGATGATCTCTTTCTGCTTTCTGGGGGTCAAACAATATACTTTGGAGCAGCAGAAAAGGCAGTTGAGTTCTTTGGCAAAGCAGGATTTCCTTGTCCAAGTAGAAGAAACCCTTCTGATCATTTCCTCCGTTGTATTAATTCAGACTTCGACAATGTCACAACTATCATGGCCTCCCGGAGAATACATGAACAAAAATCATTAACATCAGCATCAGTGATGAACTTAACAACTGCTGCAATCAAAGCAATACTCATAGAGAAATACCGATGGTCAGAATATGCAACTACTGCAAGAGCAAGAATCAAAGAAATCTCAAACATTGAAGGACATGATACTGAAAGTAAAAGTAAGAGCCAAGCCAGATGGTGGAAGCAACTATCAACACTGACTAGCAGATCTTTTGTGAACATGTCTAGAGATGTGGGGTACTACTGGATAAGGATGGCAATCTATGTTGCCTTATCTTTCTGTGTTGGAACAATCTTTTTTGAAGTTGGATCAAGTTATAGATCTATTTTTGCAAGAGGAGCATGTGGTGCTTTTGTATCAGGTTTCATGACATTCATGTCCATCGGAGGATTCCCATCCTTCATAGAAGAAATGAAGGTGTTCTACAAGGAAAGGCGCAATGGGTATTATGGGATTGGAGTCTACATTCTATCAAATTTTCTCTCTTCCTTTCCCTTTGTGACAGTTATGTCCATTGCTACTGGAACTATAACCTATTATATGGTCAAGTTTCGTCCTGAGTTTTCACATCTTTCATATATATGCCTGGACCTTTTGGCCTGCATTGCAGTTGTAGAGAGCTCCATGATGATCATAGCTTCATTGGTTCCCAACTTCCTGATGGGATTGATAATAGGAGCAGGATATATTGGTGTTATGATGATGACTGCTGGCTATTTCCGTCAGATCCCTGATCTTCCAAAATTCTTCTGGCGCTACCCAATGTCATACATAAATTATGGTGCATGGGCATTGCAGGGAGCTTTCAAGAATGACCTGATTGGGATGGAGTTTGATCCTTTAGTACCTGGGGACCCAAAGCTGAAAGGAGAAATCATCCTCACAACCATGCTTGGGATGAAAACTGATCATTCAAAATGGTGGGACTTAGCTGTAGTCACCCTCATCCTCATATTTCTTAGAGTTATTTTCTTTTTCATTCTCAAGTTCAAGGAGAGAGCTGCACCTTACCTTCACAGTATCTACACCAAGCAAGCCCTGCAACGTATCAAGAAACGACCTTCATTCAGGAAACCACCAGCTTTCCCTTCCAAGAGGCACCAAGCTCTGCATCCATTGTCATTTCAAGAGGGTCTCAACTCCCCAATTCATTAG 2076 0.4099 MEEIEQDTANNNIGATDDHEIMRVSKQGRGMHLVWEDLSVVIPNFGEGHTKRLLNGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMTGNVLLNGKKRRLDYGVVAYVTQEDILLGTLTVRETISYSANLRLPATMTKEEVNDIVEGTIMEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILIRPCLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGAAEKAVEFFGKAGFPCPSRRNPSDHFLRCINSDFDNVTTIMASRRIHEQKSLTSASVMNLTTAAIKAILIEKYRWSEYATTARARIKEISNIEGHDTESKSKSQARWWKQLSTLTSRSFVNMSRDVGYYWIRMAIYVALSFCVGTIFFEVGSSYRSIFARGACGAFVSGFMTFMSIGGFPSFIEEMKVFYKERRNGYYGIGVYILSNFLSSFPFVTVMSIATGTITYYMVKFRPEFSHLSYICLDLLACIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIPDLPKFFWRYPMSYINYGAWALQGAFKNDLIGMEFDPLVPGDPKLKGEIILTTMLGMKTDHSKWWDLAVVTLILIFLRVIFFFILKFKERAAPYLHSIYTKQALQRIKKRPSFRKPPAFPSKRHQALHPLSFQEGLNSPIH* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0241 691 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Lja3g0241 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 277 IPR003439 GO:0005524
Lja3g0241 691 Gene3D - 21 271 IPR027417 -
Lja3g0241 691 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 27 685 - -
Lja3g0241 691 Pfam ABC-2 type transporter 369 578 IPR013525 GO:0016020|GO:0140359
Lja3g0241 691 Pfam ABC-2 type transporter 234 289 IPR043926 GO:0140359
Lja3g0241 691 SMART AAA_5 63 262 IPR003593 -
Lja3g0241 691 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Lja3g0241 691 CDD ABCG_EPDR 30 259 - -
Lja3g0241 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 274 IPR027417 -
Lja3g0241 691 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 27 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0241 Lja-Chr3 2435682 2443295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0241 52 248 Calmodulin-binding Proteins AT2G36910 29.954 3.34e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0241 K05681 - gmx:100788651 1155.97