Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0203 ATGGCAAACTCCTCATCAGAGGTTATTACATGCAAAGCTGCAATATGCTGGGGAGTAGGAAAGCCTGTGACAGTGGAAGAAATACAAGTAGATCCACCAAAAGCAACTGAAGTCCGAGTTAAGATGCTTTGTGCCAGTGTTTGCCACACAGATATCACAAGCACTCAAGGATTCCCAGGTGTTTATCCTGTAGTACTTGGACATGAAGGAGTTGGGGTTGTGGAGAGTGTTGGTGATCAAGTGAAAAGTCTGAAAGAAGGGGATGTTGTGATTCCAACATACATAGGAGAGTGTCAAGAATGTGAGAATTGTGTCTCAGGAAAAACCAATCTGTGTCTCACATATCCTGTAAGATTGACTGGTCTGATGCCAGATAACACTTCAAGGATGTCCATCAGAGGCCAGAGGCTACACCATGTTTTGAGCTGTGCTACATGGTCTGAGTACATGGTTGCTGATGTCAACTATGTACTCAAAGTTGATCCAAGCATTGATCCAGCACATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAAGCAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTATTGGTCTTGGAGCTGTTGGATTAGGGGCTATAAGTGGTGCCAAGATGTTGGGAGCAACTAAGATTATTGGGATTGACAAAAATGAGATGAAAAGAGAAAAAGGAGAAGCTTTTGGGATGACCCACTTTATAAATCCTGGTGATTCCACTAAATCTGTTTCAGAATTGGTGAAGGAGCTGAGTGGTGGGAGGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTCCCCCTTTACTTACTGAATCATTGGAAGCCACAAAAGTGGGAACTGGTGAAACAATAGCAATTGGTGTAGGAACTGAACCTATTGTGCCCTTTGGTATTGGTTCCATTTTGTATGGAAGAACTCTGAGAGGTTCTGTTTTTGGAGGGCTAAAAACCATATCAGACCTTTCCATCATAGCTAACAAATGTCAAAAAGAGATGCTTTGTGCCAGTGTTTGCCACACAGATATCTCAAGCACTCAAGGATTATCAGATAACTTTCCTCTAGCACCTGGACATGAAGGAGTTGGTGTTGTGGAGAGTGTTGGTGACCAAGTGAAAAATCTGAAAGAAGGGGATGTGGTGATTCCAACACACATAGGAGAGTGTCAAGAATGTGAGAATTGTGTCTCAGGAAAAACCAATCTGTGTCTGAAATACCCTATGAGAGTGACTGGCCTGATGCCAGATAACACTTCAAGGATGTCCATCAGAGGCCAGAGGCTACACCATATTTTTAGCTGTGCTACATGGTCCGAATACATGGTCAGTGATGTCAACTATGTGCTCAAAGTTGATCCAAGCATTGATCCAGCACATGCTAGTTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCCTGGAAGGAAGCCAAGGTTGAAAGTGGATCAAGTGTAGCTGTTTTTGGACTTGGGGCTGTTGGATTAGGGCCTATCAGTGGAGCCAAGATGCTGGGAGCAACTAAGATAATTGGGATTGACAAAAATGAGATGAAGAGAGAAAAAGGAGAAGCTTTTGGAATGACCCACTTTATAAATCCTGGTGATTCCACTAAATCTGCTTCAGAATTGGTCAAGGAGCTGAGTGGTGGAATAGGTGTGGATTATTCCTTTGAGTGCTCTGGAGTTGCCCCCTTACTTACAGAATCCTTGGAAGCCACAAAAGTGGGAACTGGTGAAACAATAGCAATTGGTGTAGGAACTGAACCTATTGTGCCCTTTGGTATTTTGTCCATTTTGTATGGAAGAACTTTGAAAGGTTCTATTCTTGGAGGGCTAAAAGCCATATCAGACTTTTCCATCATAGCTAACAAATGTCAGAAAGAGGAGTTCCCTCTTCAAGAACTATTCACCCATGAGGTCACACTGGCAGATATAAGCAAAGCATTTGAGCTATTGAAACAATCCAGTTGCGTGAAAGTTGTCATCAAGATGTGA 2016 0.4301 MANSSSEVITCKAAICWGVGKPVTVEEIQVDPPKATEVRVKMLCASVCHTDITSTQGFPGVYPVVLGHEGVGVVESVGDQVKSLKEGDVVIPTYIGECQECENCVSGKTNLCLTYPVRLTGLMPDNTSRMSIRGQRLHHVLSCATWSEYMVADVNYVLKVDPSIDPAHASFISCGFSTGFGAAWKQAKVESGSSVAVIGLGAVGLGAISGAKMLGATKIIGIDKNEMKREKGEAFGMTHFINPGDSTKSVSELVKELSGGRGVDYSFECTGVPPLLTESLEATKVGTGETIAIGVGTEPIVPFGIGSILYGRTLRGSVFGGLKTISDLSIIANKCQKEMLCASVCHTDISSTQGLSDNFPLAPGHEGVGVVESVGDQVKNLKEGDVVIPTHIGECQECENCVSGKTNLCLKYPMRVTGLMPDNTSRMSIRGQRLHHIFSCATWSEYMVSDVNYVLKVDPSIDPAHASFISCGFSTGFGAAWKEAKVESGSSVAVFGLGAVGLGPISGAKMLGATKIIGIDKNEMKREKGEAFGMTHFINPGDSTKSASELVKELSGGIGVDYSFECSGVAPLLTESLEATKVGTGETIAIGVGTEPIVPFGILSILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQELFTHEVTLADISKAFELLKQSSCVKVVIKM* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0203 671 Gene3D - 179 317 - -
Lja3g0203 671 Gene3D - 476 614 - -
Lja3g0203 671 CDD liver_alcohol_DH_like 9 338 - -
Lja3g0203 671 SUPERFAMILY GroES-like 5 190 IPR011032 -
Lja3g0203 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 461 629 IPR036291 -
Lja3g0203 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 333 IPR036291 -
Lja3g0203 671 SUPERFAMILY GroES-like 338 495 IPR011032 -
Lja3g0203 671 Gene3D - 15 336 - -
Lja3g0203 671 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Lja3g0203 671 PANTHER ALCOHOL DEHYDROGENASE 338 670 - -
Lja3g0203 671 PANTHER ALCOHOL DEHYDROGENASE 6 338 - -
Lja3g0203 671 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 364 378 IPR002328 GO:0008270|GO:0016491
Lja3g0203 671 Pfam Alcohol dehydrogenase GroES-like domain 36 160 IPR013154 -
Lja3g0203 671 Pfam Alcohol dehydrogenase GroES-like domain 339 456 IPR013154 -
Lja3g0203 671 Gene3D - 338 666 - -
Lja3g0203 671 Pfam Zinc-binding dehydrogenase 499 618 IPR013149 -
Lja3g0203 671 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Lja3g0203 671 PANTHER ALCOHOL DEHYDROGENASE-RELATED 338 670 - -
Lja3g0203 671 PANTHER ALCOHOL DEHYDROGENASE-RELATED 6 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0203 Lja-Chr3 2011275 2026512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0203 333 662 Monolignol Biosynthesis Gene Families AT2G21730 27.515 1.07e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0203 K00121 - gmx:100798341 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0203 3 2011275 2026512 Lja3g0203 3 2011275 2026512 ECH