Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0202 ATGTGGACCCCATTTTTGTTGCGCATGGCTGCTGCTGAACAAACCAACCCCAACAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTGATGAAATTATCAAATTAAGTTACCGAAGACTCGCAATGAAGTGGCATCCTGACAAGCACAAAGGTGACGGTGACGGTGATGTTACTGCAAAATTTCAAGAGATAAATGAAGCTTACAATGTTTTGAGTGATCCTGCCAAGCGTTTGGACTACGATTTGACTGGGACGTGTGAGGTTGAAAAGTATAGTTTGCAGGAATATCTTGCTAGATTTAAAGGAATGATTCTTACCTGCAATGGACTTGGTATCAATCATGCTGACAGATGGTATTTGCTTTTAATCTTTTTCCTCTGTCTTTCTATTTGTCTCTCTGTACTGGATAGAGAGTTATATAGTTGGTTCTTTCCACACAACCAGATGAACTTTATTATTATTTTAAACCCATCATTTGCTTCAGACATTCTTTTGTATGTCCGTGGTAAGTTTTAG 525 0.3848 MWTPFLLRMAAAEQTNPNKDYYKVLEVDYDATDEIIKLSYRRLAMKWHPDKHKGDGDGDVTAKFQEINEAYNVLSDPAKRLDYDLTGTCEVEKYSLQEYLARFKGMILTCNGLGINHADRWYLLLIFFLCLSICLSVLDRELYSWFFPHNQMNFIIILNPSFASDILLYVRGKF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0202 174 PRINTS DnaJ domain signature 59 79 IPR001623 -
Lja3g0202 174 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lja3g0202 174 PRINTS DnaJ domain signature 79 98 IPR001623 -
Lja3g0202 174 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lja3g0202 174 PANTHER DNAJ PROTEIN-LIKE 13 126 - -
Lja3g0202 174 Gene3D DnaJ domain 6 101 IPR036869 -
Lja3g0202 174 SUPERFAMILY Chaperone J-domain 17 113 IPR036869 -
Lja3g0202 174 CDD DnaJ 20 76 IPR001623 -
Lja3g0202 174 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 13 126 - -
Lja3g0202 174 SMART dnaj_3 19 79 IPR001623 -
Lja3g0202 174 Pfam DnaJ domain 20 84 IPR001623 -
Lja3g0202 174 ProSiteProfiles dnaJ domain profile. 20 87 IPR001623 -
Lja3g0202 174 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0202 Lja-Chr3 1991752 1995285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0202 11 84 C2H2 Transcription Factor Family AT1G74250 40.260 3.93e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0202 - - lja:Lj3g3v3639180.1 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0202 3 1991752 1995285 Lja3g0202 3 1991752 1995285 ECH