Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0194 ATGAGAGACGTTTGTAGAAACTTTCAGCGAGGAAGTTGTCAATATGGAGAAAGGTGTAAGTTTCTACATGCTGTTCAAACACAGAGAAAACCTAATCATTCTTACCAGCACCAAAATACCAATAACCCTTTTGGGTTTGGCTCTAAGTCTGCATCTGCCTCTGCCTCCCAGCAAAGGACCAACCCTTTTGGTTTTGGCTCGCAGAACAGCTCCTACTCAAATGCCCCATCTCATTCCGACTTCAAGCCCAACCAATTCAAGCCTTTTGAAAACAAATGGAGTCGATCTTCATCCCAACCCCAGACTGGTGCTTCACGTCAATCTGATAACAATTCCCAATCAGTGAATCATAAATGCACAGATCCTGAGATCTGCAAGCGCCAGATTGCGGAAGACTTTGAGAACGAGAAACCGCTTTGGATACTTACATGCTACACTCATAGCAGAGGTGCTCCTTGTGACATTGTTGGTGACATTAGTTATGAAGAACTGCGAGCAGCCGCTTATGAGGATGCTAAGAAGGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAATATTCTAAAATCCAAGTTGATTGAATTTGAGAAACTGCGTTCTGAACCCTACAACATTCCACTCGATTTATCTCTTGACATTCAAAATCACCAATCTAATGTAGCCCATGCAAATCCATTTTCACCAACTACTCAAAATAGCGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAACGCGGGTTTTGAAAGGACCTCTGCACCACAAATGAACACTTTGGCACAGCCTAATTCCTTTGGAAGTGGAGGAAACTTTTTGACATCCAACACACCAAATCTATTTGGTAGTAGCATCTCAGGTGTTCAAAGCAGCCCCTTTTCTGCACCAGCGCAGGTGACAATGTTTCCGGGTTCAATGTCCCAGCCCCAGCAATCACCTGTTGCCTTCAATGGCTCTAGCTCCACTACAATGTTTCAGACAACATCAGATGTTCAGTTAAATAAGTCCCAAGTGGAGAATGTGTCCGGAGATAACAGTATTTGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCTGAAGAAGCTCCTCCAGATGCATTTGTTCGGTAG 1122 0.4367 MRDVCRNFQRGSCQYGERCKFLHAVQTQRKPNHSYQHQNTNNPFGFGSKSASASASQQRTNPFGFGSQNSSYSNAPSHSDFKPNQFKPFENKWSRSSSQPQTGASRQSDNNSQSVNHKCTDPEICKRQIAEDFENEKPLWILTCYTHSRGAPCDIVGDISYEELRAAAYEDAKKGMSLQSIVEKERNILKSKLIEFEKLRSEPYNIPLDLSLDIQNHQSNVAHANPFSPTTQNSGPLSVSSFSQLGASLNAGFERTSAPQMNTLAQPNSFGSGGNFLTSNTPNLFGSSISGVQSSPFSAPAQVTMFPGSMSQPQQSPVAFNGSSSTTMFQTTSDVQLNKSQVENVSGDNSIWLKEKWNPGEIPEEAPPDAFVR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0194 373 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Lja3g0194 373 MobiDBLite consensus disorder prediction 89 118 - -
Lja3g0194 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 23 IPR000571 GO:0046872
Lja3g0194 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 371 - -
Lja3g0194 373 MobiDBLite consensus disorder prediction 30 118 - -
Lja3g0194 373 PANTHER MAKORIN-RELATED 2 371 IPR045072 -
Lja3g0194 373 MobiDBLite consensus disorder prediction 30 81 - -
Lja3g0194 373 Gene3D - 1 58 - -
Lja3g0194 373 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Lja3g0194 373 SMART c3hfinal6 1 25 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g0194 zf-CCCH 2.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0194 K14321 - gmx:100782777 479.559