Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0188 ATGGGGAGAACACCATGCTGTGATGAAATTGGATTGAAGAAGGGGCCTTGGACCCCGGAAGAGGATGCAATATTGGTGGATTACATTCAGAAACACGGCCATGGAAGTTGGAGAGCACTTCCGAAGCTTGCAGGACTGAACAGGTGCGGGAAGAGTTGCAGGCTAAGGTGGACTAACTACTTGAGGCCTGATATTAAAAGAGGAAAGTTCACTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCTGTTCTTGGGAATAAGTGGTCTGCCATAGCAGGTCATTTGCCAGGGAGGACTGATAATGAAATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTCACTCATCGTCCAAGATTAGATCACCTTAATCTTCTATCCAATCTCCAACAGTTCCTAGCTGCCACAAACATGGTCACTAGTTTCACAAACACTTTGGATTCTAATGCTGCTCTGAGGCTGCAATCAGATGCAACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCAAGTTCTTGGAACCAATCCTGCCTCAAACTTGGAGCTACTTAATCAACTTGGACCATCATCTTCAATTTCAGACACTTTTCTTCATGAAGCTTTAGGATTGAATCAATCTAAGCTCCAAGAACTTTATAAGAGTTCAATTGTTTTTCCTTCTCATCAAAATCTGTCTAATTTGCAAACCTTAGAAGTCCCACATCATCTGCAGCAACATTACATGAATGGAAGCAGCACTATTAATAGTTGCATGCAGTCTCGAAAGGTGGTTGATGAACAACTTGATGCCACAAACTCTTCTTCAACTATACCATTAAATTCACTTCCAAATCTGGTTTCAGCATCACCTCAATGTTCCACTGTCAAGGAAATGGAAAACAAGGTGAATCCAAATGAGTGCTCCAACCCTTCTTCCACTTCAACCACCTTTGAAATGTGGGGAGATTTCATGTGTGAGGAAGTAAACGATGATTATTGGAAAGACCTTATAGACCAAGAGTCTAACCGGTAA 1047 0.4174 MGRTPCCDEIGLKKGPWTPEEDAILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRLDHLNLLSNLQQFLAATNMVTSFTNTLDSNAALRLQSDATQLAKLQLLQNILQVLGTNPASNLELLNQLGPSSSISDTFLHEALGLNQSKLQELYKSSIVFPSHQNLSNLQTLEVPHHLQQHYMNGSSTINSCMQSRKVVDEQLDATNSSSTIPLNSLPNLVSASPQCSTVKEMENKVNPNECSNPSSTSTTFEMWGDFMCEEVNDDYWKDLIDQESNR* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0188 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g0188 348 CDD SANT 69 112 IPR001005 -
Lja3g0188 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g0188 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 345 - -
Lja3g0188 348 CDD SANT 16 61 IPR001005 -
Lja3g0188 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g0188 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g0188 348 SMART sant 66 114 IPR001005 -
Lja3g0188 348 SMART sant 13 63 IPR001005 -
Lja3g0188 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g0188 348 Gene3D - 69 116 - -
Lja3g0188 348 Gene3D - 13 66 - -
Lja3g0188 348 PANTHER MYB TRANSCRIPTION FACTOR 3 345 - -
Lja3g0188 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g0188 348 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0188 Lja-Chr3 1870499 1872416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0188 1 343 MYB Transcription Factor Family AT5G16770 50.279 1.86e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g0188 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0188 K09422 - gmx:547488 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0188 3 1870499 1872416 Lja3g0188 3 1870499 1872416 ECH