Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0184 ATGGCGGCGCCATTTCTGAGCAAGACGTATGAGATGGTCGATGATTCCTCCACCGATTCCACTGTTTCGTGGGGTCTCAACAACAACACCTTCGTCGTTTGGAACGTCACCGATTTCGCCAAACACATCTTGCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAACTCAACACCTATGGTTTTAGGAAGGTTGATCCGGATCGCTGGGAATTTGCACATGAAGGGTTTTTAAGGGGTCAAAAGCACTTGTTGAATACTATCAGGAGGCGGAAATCTGCCCATGTCAATGGCGGTAGCCAACCGCCGGCTCAGGTGCAGAAGCCGCCTGCTGGGGCGTGTGTTGAAGTGGGTAAGTTTGGGATTGATCAAGACATTGAGAGACTGAAAAGGGATAAAAATGTTCTTATGCAAGAACTTGTGAGGTTAAGACAACAGCAACAATCGACTGATAACCAATTGCAAGGTGTTGGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCACCAGATGATGTCATTTCTGGCTAAGGCCATGCATAGTCCGGGAATATTGGCTCAGTTTGTACAGCAGCAGAATGAAAGTAATAGACACATTTCTGGAGTTAAAAAGAGGAGGCTTCATAGGCAAGAAGATGAAGAAGAAGGAGAGGAAGAAGATAGTTTAGCTACCAAGCATCTCCATAATGCTCTTGATGGACATGTTGTCAAGTACCAGCCTTCGATAAATGAGGCAGCCAAAGCATTACTTCGCCAGATATTGCAAAAGAACAATTCTACAAGGATGGAATCATCAATTAAGAACCCTGATGCATTCCTTATTGATGATGTTCCTTCAGCCATTGCATTAGATAGCAGTGGTTCATTCACTCAGGTCTCCGGTGTAACACTTTCTGAGGTTCCACCTATTTCTGGGCAGCCATGTGTGGCAGTAGAATCTCAATTTCCTGTTAGTTGTATGACCAATAGCATGTCTGAGGTGCAACCTCCACCTGCTGTGTTGACGGATTGTGTTAGCACAGCTGAATTTCCAGAATTAATGGCACGAAGTTGCCAAGATAGTGTTTTGGATTTTGGTAAAGTTCAAGGATCGGGGACAGAAAGCGGCTCCATGAATCCTGCCCTAAGTTTTGCAGGCTCTAACATCGGGAGTGAGCCGGAGATAGAGGCAATGTCGACTGTTTTAGATGGGACACAGTCTCTTGAAGCTAATGCATTTTCTCCTGATGCAGATGTAATTTCTAAGCTTCCAGGAATCAATGATGAATTCTGGGAACAATTTTTTAGCCCAAGCCCACTTACTGGAGATACAGATGAAGTTGAATCCAGTTCTCTGGGATATGGGTTGACTGAAGACCAGGAATATGAAAAGGAGATTCAACAGGAAAAGATGGATAAGAAACAGTATATTGACCATCTTTCACATCAGATGGAACTTCTTGCATCGGAGTCTTAA 1464 0.4467 MAAPFLSKTYEMVDDSSTDSTVSWGLNNNTFVVWNVTDFAKHILPTYFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHEGFLRGQKHLLNTIRRRKSAHVNGGSQPPAQVQKPPAGACVEVGKFGIDQDIERLKRDKNVLMQELVRLRQQQQSTDNQLQGVGQRVQVMEQRQHQMMSFLAKAMHSPGILAQFVQQQNESNRHISGVKKRRLHRQEDEEEGEEEDSLATKHLHNALDGHVVKYQPSINEAAKALLRQILQKNNSTRMESSIKNPDAFLIDDVPSAIALDSSGSFTQVSGVTLSEVPPISGQPCVAVESQFPVSCMTNSMSEVQPPPAVLTDCVSTAEFPELMARSCQDSVLDFGKVQGSGTESGSMNPALSFAGSNIGSEPEIEAMSTVLDGTQSLEANAFSPDADVISKLPGINDEFWEQFFSPSPLTGDTDEVESSSLGYGLTEDQEYEKEIQQEKMDKKQYIDHLSHQMELLASES* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0184 487 Pfam HSF-type DNA-binding 5 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 MobiDBLite consensus disorder prediction 199 225 - -
Lja3g0184 487 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 4 461 - -
Lja3g0184 487 ProSitePatterns HSF-type DNA-binding domain signature. 44 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 MobiDBLite consensus disorder prediction 433 452 - -
Lja3g0184 487 Gene3D - 1 95 IPR036388 -
Lja3g0184 487 MobiDBLite consensus disorder prediction 433 454 - -
Lja3g0184 487 PRINTS Heat shock factor (HSF) domain signature 43 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 PRINTS Heat shock factor (HSF) domain signature 5 28 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 461 IPR027725 -
Lja3g0184 487 SUPERFAMILY "Winged helix" DNA-binding domain 3 94 IPR036390 -
Lja3g0184 487 SMART hsfneu3 1 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja3g0184 487 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0184 Lja-Chr3 1840308 1842980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0184 4 487 HSF AT5G16820 49.095 1.31e-136 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja3g0184 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0184 K09419 - gmx:100793665 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0184 3 1840308 1842980 Lja3g0184 3 1840308 1842980 ECH