Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0179 ATGATGTCAGAAGCTTCTTCTGTGAACACCAAACAGAACACAGAATTATATGGGCCCACCACTCCAACTAGGCTAAACCTCTCAAATCCCCAAACTACCCACATCTTTAGATCAAAATTACCAGACATACCCATCCCTTCCAACCTCCCACTCCACGCCTACTGCTTCCAAAAACTCCCGGAGCTCGCCGACCGGCCATGCCTCATCTCCGCCGGCAGAACCTTCACCTACGCCGAAACTCACCTCCAATGCCGGAAACTCGCCGCCGGTCTCTCCAACCTCGGCATCACCAAAGGCGACGTCATCATGATCCTCCTCCCAAACTCCCCGGAGTTCGTCTTCTCCTTCATGGCGGCCTCCATGCTCGGCGCCGTCGCCACCACCGCCAATCCATTCTACACCACCGCCGAAATTTTGAAGCAAATAACCGCTTCCAAAGCAAAGCTCGTGATCACGCGGTCCACGCACGTGGACAAGCTCCCCAAGGAGGCTCTAACGGCCGTGATAACCGTCGATGACCCGCCGGAGAACTGCTTACGTTTCTCGGAGGTTTCGGAGGCGGAGGAGTATGAGTTGCTGGAGGCGGAGATCACGGCGGACGATGCGGTGGCGCTGCCGTTTTCGTCGGGGACGACAGGGTTGGCGAAGGGGGTGATTCTGACACACAAAAGCCTCGTGACGAGCGTGGCGCAGCAGGTGGACGGAGAGAATCCGAACCTGTACCTGAGCGAAAACGACGTCGTGCTGTGCGTGCTGCCGTTGTTTCACATATTCTCGATGCACAGCGTGATGATGTGCGCGCTGAGGGCGGGGAGCGCGATCATGGTGGTGGAGAGGTTCGAGATTAAGGCTCTGCTGGAGGGGATAGAGAGGGAGAGAGTGACGGTGGCGATGGTAGTGCCGCCGATGGTGGTGGCGCTGGCGAAGGACCCGAGGGTGGAGGAGTATGACCTCAGCTCCATACGGTTGGTGATGTCAGGGGCTGCGCCGCTGGGGAAGGACCTGGAGGATGCTCTCCGGAGCCGGTTGCCTCGCGCAGTTTTGGGACAGGGTTATGGGATGACAGAGGCGGGGCCGGTTTTGTCAATGTGTTTGGGGTTTGCGAAGCAGCCGTTTCCAACGAAGCCAGGGTCGTGCGGCACGGTGGTGAGGAATGCTGAGTTGAAGGTGATTGACCCTGATAGTGGTTGCTCCGTTCCTCGTAACCGCTCCGGCGAGATTTGCATCCGTGGCCAACAAATCATGAAAGGATACCTGAATGATGAGAAGGCCACTGCAGCAACTATTGATGCACAAGGTTGGCTTCACACTGGTGACATTGGTTATGTAGATGATGATGATGAGATTTTCATTGTTGATAGGGTTAAGGAACTCATCAAATTCAAAGGTTTCCAGGTGCCTCCTGCAGAACTTGAAGGTCTTCTTATGAGCCACCCTTTCATTGCAGATGCAGCTGTTGTTCCGAAAATGGATGATGTTGCAGGTGAAGTTCCTGTTGCTTTTGTTGTGGTGAGTTTTGATCTTACTGAAGAGGCTGTAAAAGAGTTTATAGCTAAACAGGTGGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTTGATGCAATTCCAAAGTCTCCATCTGGAAAGATATTAAGAAGAGAGCTCAGAGCAAAGCTTGAGAGGATCACCTAG 1674 0.537 MMSEASSVNTKQNTELYGPTTPTRLNLSNPQTTHIFRSKLPDIPIPSNLPLHAYCFQKLPELADRPCLISAGRTFTYAETHLQCRKLAAGLSNLGITKGDVIMILLPNSPEFVFSFMAASMLGAVATTANPFYTTAEILKQITASKAKLVITRSTHVDKLPKEALTAVITVDDPPENCLRFSEVSEAEEYELLEAEITADDAVALPFSSGTTGLAKGVILTHKSLVTSVAQQVDGENPNLYLSENDVVLCVLPLFHIFSMHSVMMCALRAGSAIMVVERFEIKALLEGIERERVTVAMVVPPMVVALAKDPRVEEYDLSSIRLVMSGAAPLGKDLEDALRSRLPRAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKPGSCGTVVRNAELKVIDPDSGCSVPRNRSGEICIRGQQIMKGYLNDEKATAATIDAQGWLHTGDIGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLMSHPFIADAAVVPKMDDVAGEVPVAFVVVSFDLTEEAVKEFIAKQVVFYKRLHKVYFVDAIPKSPSGKILRRELRAKLERIT* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0179 557 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0179 557 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Lja3g0179 557 Gene3D - 27 455 IPR042099 -
Lja3g0179 557 CDD 4CL 45 549 - -
Lja3g0179 557 Gene3D - 456 556 IPR045851 -
Lja3g0179 557 PANTHER 4-COUMARATE--COA LIGASE 3 34 552 - -
Lja3g0179 557 Coils Coil 546 557 - -
Lja3g0179 557 SUPERFAMILY Acetyl-CoA synthetase-like 33 554 - -
Lja3g0179 557 Pfam AMP-binding enzyme 63 461 IPR000873 -
Lja3g0179 557 Pfam AMP-binding enzyme C-terminal domain 470 543 IPR025110 -
Lja3g0179 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 34 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0179 Lja-Chr3 1812463 1814736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0179 35 487 Monolignol Biosynthesis Gene Families AT3G21240 64.208 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0179 K01904 - gmx:100790396 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0179 3 1812463 1814736 Lja3g0179 3 1812463 1814736 ECH