Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0175 ATGGCTTACATGTGTGCAGACAGTGGAAACCTCATGGCAATTGCTCAACAAGTGATCAAGCAGAAACAGCAACAAGAGCAAGAACAACAACAACAACAACAACAACAACAGCAACAACATCAACAGCATCAACAGATGTTGGGTATCAACCCTCTGTCCCTCACTCATCCATGGAGCATTCACAACACTCCACCCCACCTGGGTTTCCCTCTTACAGGCAATGATTTCCCGGATCCCTTTCAAGTCGGGTCGGGTCCTGACAACGCCGATCCCGCCTTCCAGTTCCCTCCACCGCTCGACCCTCATTCCGCCGCCGCCTTCAGATTCTCCGATTTCGACTCCGACGACTGGATGGACACTCTTATGGCCGGCGCCGACTCAACCACCGACCCGCCACCACCTGATTTCGCTCTCAACCCGTTTTCCTCTTGCCCGACCCGCCTCTCCTCTCCCTCGGATCTCAACCGGGTCATCTTCACGTCAGAGTCTCAGGTCACCACAACCATCCCCCTTCAGCTCCCAACCACCCCACCCACTCTCTCCAAAGACACACCACCACCACCGCCACCGCCGGCGAAGACCACCCTTCACCGGGACGCCGCCGCCGCCGCTGAAACGGCGTCTTCCCCGCACCCCCTACTGAAAGCGCTAACAGAGTGTGCCCGGTTCGCCGAAACCGAACCAGATCAAGCCATGGAGTCTCTGACCCATCTCAGCAAATCAGTTTCTCAGCAAGGAAACCCTACTCAGAGAGTAGCTTTCTACTTCTCCCAAGCCTTAACGCGGAAAATCTCAGCAGAGACACAGAAACTGAAGGTGAATGATAAGAACTCTGCAACTGGGTTGGAACCTACTGCTTCAGAGGAGTTGATTCTCTCTTACAAAGCGCTCAACGATGCTTGTCCTTATTCCAAGTTTGCACACTTGACTGCAAACCAAGCTATATTGGAAGCAACAGAAGGAGCTACAAGGATTCACATCGTTGATTTTGGGATTGTTCAAGGGATTCAATGGGCTGCACTGTTGCAAGCATTTGCTACACGCTCTTCTGGGAAGCCTCAGAGCATAAGAATATCAGGGATACCAGCTATGGCTCTTGGAACTTCCCCTAGTTCTTCTCTTTCTGCTACTGGTAACCGTTTATCTGAGTTTGCTAAGCTTCTTGGCTTGAATTTTGTGTTTACACCGATTCTCACTCCTATTCATGAGCTTAATGAGTCTAGCTTTTGCATTGAGCCAAATGAGGCCTTGGCTGTGAACTTCATGCTTCAGTTGTATAATCTCTTGGATGAGACTCCAACTGCTGTTGAAACTGCACTTCGGTTAGCTAAGTCTTTGAAGCCTAGGATTGTGACTCTTGGTGAGTATGAAGCGAGTTTGACACGAGTTGGATTTGTCAGCAGGTTCAAGGCTGCACTGAAGCATTTCTCTGCTTTGTTTGAGTCTCTGGAGCCTAACTTGCCCTCTGACTCGCCTGAGAGGTTCCAGGTGGAGAGCCTTCTGCTCGGGCGGCGGATCGCGGGTGTGATCGGGCCGGAGTTGCCGGGGTGTGTGAGGGAAAGGATGGAGGATAAAGAGCAGTGGAGGGTTCTGATGGAAAGTTGTGGTTTTGAATCAGTAAGTCTTAGCCATTATGCAATTAGTCAAGCTAAGATACTCTTGTGGAATTACAGTTACAGTTCTCTGTATTCGCTTGTTGAATCTCAACCTGGGTTTTTGACTCTGGCTTGGAAAGATGTTCCCCTCTTGACTGTGTCTTCCTGGCGTTAA 1770 0.5051 MAYMCADSGNLMAIAQQVIKQKQQQEQEQQQQQQQQQQQHQQHQQMLGINPLSLTHPWSIHNTPPHLGFPLTGNDFPDPFQVGSGPDNADPAFQFPPPLDPHSAAAFRFSDFDSDDWMDTLMAGADSTTDPPPPDFALNPFSSCPTRLSSPSDLNRVIFTSESQVTTTIPLQLPTTPPTLSKDTPPPPPPPAKTTLHRDAAAAAETASSPHPLLKALTECARFAETEPDQAMESLTHLSKSVSQQGNPTQRVAFYFSQALTRKISAETQKLKVNDKNSATGLEPTASEELILSYKALNDACPYSKFAHLTANQAILEATEGATRIHIVDFGIVQGIQWAALLQAFATRSSGKPQSIRISGIPAMALGTSPSSSLSATGNRLSEFAKLLGLNFVFTPILTPIHELNESSFCIEPNEALAVNFMLQLYNLLDETPTAVETALRLAKSLKPRIVTLGEYEASLTRVGFVSRFKAALKHFSALFESLEPNLPSDSPERFQVESLLLGRRIAGVIGPELPGCVRERMEDKEQWRVLMESCGFESVSLSHYAISQAKILLWNYSYSSLYSLVESQPGFLTLAWKDVPLLTVSSWR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0175 589 MobiDBLite consensus disorder prediction 21 45 - -
Lja3g0175 589 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 214 588 - -
Lja3g0175 589 Pfam GRAS domain family 214 589 IPR005202 -
Lja3g0175 589 ProSiteProfiles GRAS family profile. 204 589 IPR005202 -
Lja3g0175 589 Coils Coil 12 46 - -
Lja3g0175 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 214 588 IPR005202 -
Lja3g0175 589 MobiDBLite consensus disorder prediction 179 194 - -
Lja3g0175 589 MobiDBLite consensus disorder prediction 170 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0175 Lja-Chr3 1783766 1786426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0175 1 589 GRAS Transcription Factor Family AT5G66770 58.075 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0175 GRAS 1.2e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0175 - - adu:107477343 748.429