Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0173 ATGAATAGCAGTGGTGGCAGTAGTAGCGGAACGATGATGATGGGTTTCAGCAATAGCAGCAGTTATAATAGGTCACCTTTCACTGTCTCTCAGTGGCAGGAACTGGAGCATCAAGCTTTGATTTTCAAGTACATGGTTGCTGGTCTTCCTGTTCCTCCTGATCTTGTCCTTCCCATTCAGAAGAGCTTTGACTCCATCTCACACACCTTCTTCCAACACCCTTCATTGAGTTATTGCTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCAGGAAGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCGTACCCGGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAATCTCAAACTATGACACAATCACCATCAGCCGTGACATCACTGACTGTCACTGGTGGCAATAGCAGAACTGGAATTTTCCAGAACCTTCCCACAGATGCCTTTCGTAATCTCCAAGGTACTGGTTCTGGAACCGACCGTGCCGATTATCATCTAGATTCCATTCCCTATGGGATTCCAAGTAAAGAATACAGGTATCTTCAAGGGCTAAAATCTGATGGTGGTGAACGTAGCCTCTTTTCCGAAGCTTCAGGAAGCAGTAAGGTTCTCCAAATGGAGTCACAGCTGGAAAATGCATGGCCTTTGATGTCAACCAGAGTTGCGTCTTTCTCTACATCAAAATCAAGCAATAACTCCATGTTGCAGAGTTACTATCCCCAGCATTCATTTCTATCCAGCGAATATCCGTCCGGGGAAGCTGTGAAGGAGGAGGGCCAGCCGCTTCGCCCTTTCTTCAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTGGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATGTCCATTCCCATGTCATCTTCTGACTTCTCTGCAACCAGCTCTCAATCCCCACATGATAACTAA 996 0.4759 MNSSGGSSSGTMMMGFSNSSSYNRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHTFFQHPSLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSPSAVTSLTVTGGNSRTGIFQNLPTDAFRNLQGTGSGTDRADYHLDSIPYGIPSKEYRYLQGLKSDGGERSLFSEASGSSKVLQMESQLENAWPLMSTRVASFSTSKSSNNSMLQSYYPQHSFLSSEYPSGEAVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSMSIPMSSSDFSATSSQSPHDN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0173 331 MobiDBLite consensus disorder prediction 296 331 - -
Lja3g0173 331 SMART QLQ_2 25 61 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja3g0173 331 Pfam QLQ 26 60 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja3g0173 331 MobiDBLite consensus disorder prediction 289 331 - -
Lja3g0173 331 Pfam WRC 88 130 IPR014977 -
Lja3g0173 331 MobiDBLite consensus disorder prediction 119 146 - -
Lja3g0173 331 PANTHER GROWTH-REGULATING FACTOR 5 23 324 - -
Lja3g0173 331 PANTHER - 23 324 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja3g0173 331 MobiDBLite consensus disorder prediction 128 146 - -
Lja3g0173 331 ProSiteProfiles WRC domain profile. 87 131 IPR014977 -
Lja3g0173 331 ProSiteProfiles QLQ domain profile. 26 61 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0173 Lja-Chr3 1757452 1761547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0173 13 130 GRF Transcription Factor Family AT3G13960 61.290 3.92e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja3g0173 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0173 - - gmx:100787226 524.242