Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0163 ATGGGTGCTTGGGATTACAAGTTCTTTGTTGGGGTTTCATCTATCTTTATGTTGATATGGATTTCATCTGGAGATGTTTCTGTAGACAACATTAGGATAGACTGTGGATCCCTCAACAATACTCAAGTGGGGGCTTGGTTGTTTCAAGCTGATAACAACTCTTCTTCTTCCTCCTCCCACTTGCTTTCAACCTCAGAGCTTACTTTGGCTAAGGCAAACTTCACCATAGTTCCATCATCTTTTGATTCAAACCTGTACCAAACTGCTAGAATCCTCAAAGGTGTTTCTGAGTACACTTTCCCAATCAGAACACATGGAAGGCATTGGATAAGGTTGTATTTCTTCCCTTTCAGTTCAGGAAACTACAACATGAGCACTGCAAGATTCTCTGTTTCTGCTCAGAACATCACACTGCTGAAGGATTTTCAAGTAGAGAGTGGTTCTTTACTGAAAGAATACTCTTTGAATATAACTGATAGCAACCTCAAACTCAGTTTCACACCTTCTGTTGGTTCATTTGCCTTCATAAATGCCATAGAAATTTTGTCCATCCCTAACAAGGTTATTCCTGACCATGTTAGCATTGTGAGTCCAGGTGGGGATGGTAAGGTTGTGGGGGTGAAGGCATTGGAGACTGTTGCCAGGGTGAACATGGGGAATCGAACAGTGTCTCCCCTTAACGATACTTTGGGGCGTTTATGGGTCTCTGATGGTAGATATATTATACACAATGGTCTTGTGGATATTGTATCCAACATTACATCAGTCAATTTCAATGGAACAAGCATTAGTGAAGATATTGCTCCATCTACGGTGTATGGTACTGTGACTAGATTGAGGACAGGTTCAGATCCAAGAACAAACATCAATGTGACTTGGCTTTTCAGTGTAGATCCTGGCTTTGATTATTTCGTCCGTTTTCATTTCTGTGACATAGTGAACCTGCCCCCAAACACTCTCTTCAATGTTTATCTTAACTCTTGGCTTGTTTCTACTGTTGATCTTGGCAAAGAAACATCAGATAAAGCTGGTGTGCCATATTACATGGATGCCGTTACTAGGACTAGTGGTGCCAGCCATGGTTTGAATGTTAGTGTTGGTACCTACAGTATAAGTGAAGCATCTTCCCCAGAGGCCATTCTCAATGGATTGGAGATCATGAAAATCAGCAACTCAAAAGATAGTCTGGTCTTTGATTCAGAGGAAAATGGCAAGACAAAAGTTGGTTTGATAGTGGGTTTAGTGGCTGGATCTGTGGTTGGTTTTTTTGCTATAGTTACAGCTTTCGTTCTGCTTTGCAGAAGAAGAAGCAGAAGAAGAAACAGTCTCCATATTGGTGATGAAAAGGGTGACCATGGTGCTACTAGTAATTATGATGGAACTGCTTTTTTTACAAACTCAAAAATCGGGTATCGGTTGCCTCTTGCAGTGATTCAAGAAGCAACTGATAATTTCAGTGAAGATTTAGTCATAGGTAGTGGTGGTTTTGGGAAGGTTTACAGGGGAGTTTTCAAAGATGAAACAAAGGTAGCCGTGAAAAGAGGATCATGCCAGTCACAACAAGGTCTTGCTGAGTTTAGGACTGAAATTGAGATGTTGTCACAGTTTCGCCATCGTCATTTAGTATCATTGATTGGTTACTGCAATGAACAAAGTGAGAGGATCATTATTTACGAGTACATGGAAAAAGGAAGCTTGAAGGACCATCTTTTCGGATCTAATGCAGATGCAACCTGCTTAAGTTGGAAGCAAAGGCTTGAGATTTGCATAGGAGCAGCTAAAGGATTACATTATCTTCACACAGGCTCTAACAAGGCGATTATTCACCGCGATGTCAAATCTGCAAATATCCTGCTAGATGAAAACCTCATGGCTAAAGTTGCTGATTTTGGTCTTTCAAAGACTGGTCCAGACATTGATAAGAGATATGTCAGCACAGCAGTGAAAGGAAGTTTTGGCTATCTTGATCCAGAATACTTGATCACACAGCAGCTGACAGAAAAGTCAGATGTTTACTCATTTGGGGTGGTCATGTTTGAAGTCCTTTGTGGGAGACCAGTGATTGATCCATCACTTCCAAGGGAAAAGATGAACCTGGTGGAGTGGATAATGAGATGGCAGGAGAGAAGCACCATTGAGGAACTTGTTGATCATCACCTTCCAGGTTCTGGTCAGATAAAGTCAGAGTCACTCCATGAATTTGTTGACACTGCCAAAAAGTGCTTGGCAGAACATGGAATCAACAGGCCTAGCATGGGAGATGTATTGTGGCACTTGGAATATGCTTTGAGGCTGGAAGGTGTTGATGAGAGATCCAACCATGGTGGTGATGTTTCCTCCCAAATTCATCGCTCAGACACTGGATTATCTGCCATGGAATACAGCATGGGAAGTGTTGGTGACATGTCTAATGTTTCAATGAGCAAGGTCTTTGCCCAGATGGTGAAGGAGGATAGGCAACTACTTCCTTGA 2472 0.4179 MGAWDYKFFVGVSSIFMLIWISSGDVSVDNIRIDCGSLNNTQVGAWLFQADNNSSSSSSHLLSTSELTLAKANFTIVPSSFDSNLYQTARILKGVSEYTFPIRTHGRHWIRLYFFPFSSGNYNMSTARFSVSAQNITLLKDFQVESGSLLKEYSLNITDSNLKLSFTPSVGSFAFINAIEILSIPNKVIPDHVSIVSPGGDGKVVGVKALETVARVNMGNRTVSPLNDTLGRLWVSDGRYIIHNGLVDIVSNITSVNFNGTSISEDIAPSTVYGTVTRLRTGSDPRTNINVTWLFSVDPGFDYFVRFHFCDIVNLPPNTLFNVYLNSWLVSTVDLGKETSDKAGVPYYMDAVTRTSGASHGLNVSVGTYSISEASSPEAILNGLEIMKISNSKDSLVFDSEENGKTKVGLIVGLVAGSVVGFFAIVTAFVLLCRRRSRRRNSLHIGDEKGDHGATSNYDGTAFFTNSKIGYRLPLAVIQEATDNFSEDLVIGSGGFGKVYRGVFKDETKVAVKRGSCQSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCNEQSERIIIYEYMEKGSLKDHLFGSNADATCLSWKQRLEICIGAAKGLHYLHTGSNKAIIHRDVKSANILLDENLMAKVADFGLSKTGPDIDKRYVSTAVKGSFGYLDPEYLITQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKMNLVEWIMRWQERSTIEELVDHHLPGSGQIKSESLHEFVDTAKKCLAEHGINRPSMGDVLWHLEYALRLEGVDERSNHGGDVSSQIHRSDTGLSAMEYSMGSVGDMSNVSMSKVFAQMVKEDRQLLP* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0163 823 SUPERFAMILY Protein kinase-like (PK-like) 464 761 IPR011009 -
Lja3g0163 823 Pfam Protein tyrosine and serine/threonine kinase 490 754 IPR001245 GO:0004672|GO:0006468
Lja3g0163 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Lja3g0163 823 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 32 812 - -
Lja3g0163 823 PANTHER OS07G0166700 PROTEIN 32 812 IPR045272 GO:0004714|GO:0006468
Lja3g0163 823 CDD STKc_IRAK 491 760 - -
Lja3g0163 823 Pfam Malectin-like domain 77 389 IPR024788 -
Lja3g0163 823 ProSiteProfiles Protein kinase domain profile. 485 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0163 823 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
Lja3g0163 823 Gene3D - 208 391 - -
Lja3g0163 823 Gene3D - 30 184 - -
Lja3g0163 823 SMART serkin_6 485 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0163 823 Gene3D Transferase(Phosphotransferase) domain 1 561 778 - -
Lja3g0163 823 Gene3D Phosphorylase Kinase; domain 1 451 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0163 Lja-Chr3 1677441 1680470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0163 5 818 Receptor kinase-like Gene Family AT2G39360 50.120 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lja3g0163 Malectin_like 4.3e-27 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0163 - - lja:Lj3g3v3639940.1 1390.17