LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0149	ATGGCTCCATCTTCTATGACTGTTACTTCCCGTTTTCATGATTCCGTCACCAGAAATGCACTTCGCTCCTATCTCGCTGAGTTTATCTCCACTTTCTTCTTCGTCATTCTCGTCGTTGGTTCTGGAATGGCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACTAGTCTGGTTGTTTCTGCAATTGCAAATGCTTTTGCTCTGTCCTCTGTTTTGTACATTGCGTGGGACATCTCTGGCGGACACGTCAACCCGGCTCTGACCTTTGCAATGGCGGTGGGAGGCCACATTAGTGTTCCAACTGCACTCTTTTATTGGGTTGCTCAGTTAATAGCCTCTGTCATGGCTTGCCTTGTCCTCAGGGTCATTGTTGTTGGAATGCATGTTCCAACATACACTATTGCAGAAGAGATGACAGGTTTTGGAGCATCAGTACTAGAGGGTATCCTGACATTTGTTTTGGTGTACACTGTGTATGCTGCTAGGGACCCTAGGCGTGGTGCATTGAGTTCCACCGGAACACTTGCAGTTGGCTTGATAGTAGGGGCAGGTGTCTTGGCCGCAGGTCCATTCTCCGGCGGATCACTGAACCCGGCTTGTGCTTTCGGTTCGGCCGCCATCGCCGGCAGTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCTACCGTAGCTGGCCTTCTTTATGACAATGTGGTGTTCCCTCCTCAGCCTTCAGATTCAATTAGAGGGGTAGAAATTGGGGTGTAA	765	0.498	MAPSSMTVTSRFHDSVTRNALRSYLAEFISTFFFVILVVGSGMASRKLMPDASLNPTSLVVSAIANAFALSSVLYIAWDISGGHVNPALTFAMAVGGHISVPTALFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYTVYAARDPRRGALSSTGTLAVGLIVGAGVLAAGPFSGGSLNPACAFGSAAIAGSFRNQAVYWVGPLIGATVAGLLYDNVVFPPQPSDSIRGVEIGV*	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0149	254	PANTHER	AQUAPORIN TIP5-1-RELATED	7	250	-	-
	Lja3g0149	254	Pfam	Major intrinsic protein	18	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	ProSitePatterns	MIP family signature.	84	92	IPR022357	-
	Lja3g0149	254	PANTHER	AQUAPORIN-8	7	250	IPR034294	-
	Lja3g0149	254	SUPERFAMILY	Aquaporin-like	14	244	IPR023271	-
	Lja3g0149	254	Gene3D	Glycerol uptake facilitator protein.	5	247	IPR023271	-
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	22	41	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	217	237	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	66	90	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	180	202	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	103	122	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Lja3g0149	254	PRINTS	Major intrinsic protein family signature	148	166	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0149	Lja-Chr3	1565729	1567183	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0149	1	254	Major Intrinsic Protein MIP	AT3G47440	63.137	2.29e-109	314

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0149	K09873		-	gmx:100801448	428.713

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g0149	3	1565729	1567183	Lja3g0149	3	1565729	1567183	ECH