Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0147 ATGGAAGACAAGGGCTTAAAACTGGTCCATCTTCTGAAAGACACTGCAGTGTTTACTGAATCATGCAACTTCATCGATGCAGATATTGGACTGTACTATATTTCTCAGTTTGCAACCCCAGAAGGTGATTCAATGCAAAGGGTAGCCACTTATTTCAGTGAGGCACTAGCTTGTTGCCAAGTGAGCAAAAACTTGAGAGGGGTACCAAAAGTTCTAAGTTTGTCAACAAAATTATCAACTCCAGAGGAACAACTTGTAAGAAATTTCTTCTTTGAGTTGTATCCATTTTTGAAGATTGCATACAAGACCACAAATCAGGCCATCATTGAAGCCATGGGACAAGAAAAATTTATCAATATCCTTGATCTCAGTGCATGTGATGCCACTCAGTGGATTTATCTTATGAAGAGTTTGAAAGAGCATTTACCAGACCCACCAGATGTGAAAATCAAAGTTACATGCATACATGAGAAGTATGAGGTCTTAGAACAGATGGGATTGCATTTGAGACTAGAAGCTGAGAGCACTTTGGAGAATCTAGACCTTGAAAAGTTGCCTTTGGAGAAGGGAGAGCCACTTGCAATAAGCTGTGTACTTCAACTTCACTCTCTTCTAGCCACTAGTGATGAAATGGTCAGAACCATGAACTACGCACCTGCAGAAGCATCAATGAACCAATATGCACAAATGCTTGGGAAACAGAATAAGAACAAGAACAAGATCAATTCAAGTCCGGATTCAGCATTGTCACCCCTTTCTCTAAGTCCACCTAAGATGGAGTGTTTTCTAAATGGCCTGTGGAAGCTACAACCTAAAGTGATGGTGATCACTGAGCAAGAAGCCAATGTGAATGGCTCTACTTTGACAGATAGGATGGAGAATGCTTTGCAATTTTATGGTGCACTCTTTGATTGCTTGGAAGCTACCTTTCCTAGAACATTAGTGGACAGAACATTACTAGAGAAGATGCTACTTGGGAAGCAAATAAAGAACATCATTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGTATGAGGTGGTTCGGACATGGATCCCAAGGCTTCAATTGGCTGGATTTGGGATGGTATCAATCAGCCCCAATGGGATGATTCAGGCAAAAACCTTGTTGCAAAACTATGTGGGTGGATATCATACTGTACAGGACAAGAATTGCTTGTTTATGTGTTGGGAGGGAAGACCTCTCTTTTCTATATCAGCCTGGAAGTTTTAA 1230 0.4098 MEDKGLKLVHLLKDTAVFTESCNFIDADIGLYYISQFATPEGDSMQRVATYFSEALACCQVSKNLRGVPKVLSLSTKLSTPEEQLVRNFFFELYPFLKIAYKTTNQAIIEAMGQEKFINILDLSACDATQWIYLMKSLKEHLPDPPDVKIKVTCIHEKYEVLEQMGLHLRLEAESTLENLDLEKLPLEKGEPLAISCVLQLHSLLATSDEMVRTMNYAPAEASMNQYAQMLGKQNKNKNKINSSPDSALSPLSLSPPKMECFLNGLWKLQPKVMVITEQEANVNGSTLTDRMENALQFYGALFDCLEATFPRTLVDRTLLEKMLLGKQIKNIIACEGVERKERYEVVRTWIPRLQLAGFGMVSISPNGMIQAKTLLQNYVGGYHTVQDKNCLFMCWEGRPLFSISAWKF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0147 409 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 408 IPR005202 -
Lja3g0147 409 Pfam GRAS domain family 8 408 IPR005202 -
Lja3g0147 409 ProSiteProfiles GRAS family profile. 1 408 IPR005202 -
Lja3g0147 409 PANTHER TRANSCRIPTION FACTOR GRAS, SCARECROW-LIKE PROTEIN 3-RELATED 3 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0147 Lja-Chr3 1554108 1555872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0147 2 408 GRAS Transcription Factor Family AT1G50420 41.149 3.64e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0147 GRAS 2.8e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0147 - - vra:106778126 459.529