Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0143 ATGGCCAAGAAGAAGAGCTGGTTTAATTTGGTGAAGAGGTTCTTTATATGGGACACTCATTCCACACAAGAGAAGAAGGAGAGAAAAAGGAAATGGGTATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTACAGCTCCACCACCACCATCAAAAGAAACAACACTAAGTGAAGCAGAGGAGAAACAGAGCAAACAGGGGAGGAACAGAGCTACTGCTGCTGAGGCTGTTCTGCTCACTGATGTCTCACAATCTTCACATGAATGTCAAGAAAACTCAAAAGAATCTCTACTTGTTAAAAATATGAATAGTGCTCCTCAATCCATATACCAGTGCCAGAGGGAGATTAGAGAATCTGCTGCCATCAAAATCCAAACTGCATTCCGGGGTTACCTGGCAAAGAAGGCTTTGAGGGCATTGAAAGGAATAGTAAAGCTTCAAGCTATCATTCGTGGCAGAGCAGTGAGACGCCAAGCTATGAGTACTCTCAAGTGCTTGCAGTCCATTGTAAGTATCCAGTCAAAAGTCTGTGCAAGGAGATTCCAAATGGTGGAAGGAAAATGGGACTTCACTGAAAATGAAGAGATGCAAGATTCTAAAGACAAGATAATTAGGATGGACTCAAACAGTGAAAGAAAATGGGATCACAGAACTTTATTAAAGGAAGAGGTAGATGCTTCTTTCATAAGCAAGAAAGAAGCAAGTCTCAAGAGAGAAAGAATAAAAGAGTACTACTCATTTAACCATAGAAGGTCAGCGGAGACGGATAGAAGTAAAGTAAATGGAAGATGGAGGTACTGGCTGGATCAGTGGGTAGATACACAGCTTTCCAAAAGCAAAGAACTTGAGGATTTAGACTCAGTTTTCAGCTCACATTCTAGAGCTGGGGAGGAACATGAAGGAAGGAAACTTAAGCTGAGAAGTACTCGAAGACAAAATCCAGTTGAAGGATTAGATTCTCCATCAAGAAAATCTTTTCCTCACAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATTTTCTTCAACCTCTCCTGCAACTCCAGCATACATGGCTGCAACTGAATCAGCAAGAGCCAAAGCAAGATTAACAAGCTCCCCAAAAGCAAGATCTGGGAATTTGGACACATACTCTGATAGCTATTCACCTTCCAAGAAAAAGCTACCAATGGTATCTTCTGTTAACCAGCAAAGATCTCCAAGCTTCAAGGGCCTTTCAGTGCCTATAAAATCAAGCAGGACTATAAAGGATCTCAGCATTAATTCAGACTGTTCATCACTGCCTAATTGGGATCGCCCAAGTTCCTTCAAATGA 1317 0.4176 MAKKKSWFNLVKRFFIWDTHSTQEKKERKRKWVFGRLKSKRLPSITAPPPPSKETTLSEAEEKQSKQGRNRATAAEAVLLTDVSQSSHECQENSKESLLVKNMNSAPQSIYQCQREIRESAAIKIQTAFRGYLAKKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSKVCARRFQMVEGKWDFTENEEMQDSKDKIIRMDSNSERKWDHRTLLKEEVDASFISKKEASLKRERIKEYYSFNHRRSAETDRSKVNGRWRYWLDQWVDTQLSKSKELEDLDSVFSSHSRAGEEHEGRKLKLRSTRRQNPVEGLDSPSRKSFPHRRQCSVGEDHSFSSTSPATPAYMAATESARAKARLTSSPKARSGNLDTYSDSYSPSKKKLPMVSSVNQQRSPSFKGLSVPIKSSRTIKDLSINSDCSSLPNWDRPSSFK* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0143 438 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Lja3g0143 438 MobiDBLite consensus disorder prediction 419 438 - -
Lja3g0143 438 MobiDBLite consensus disorder prediction 367 409 - -
Lja3g0143 438 SMART iq_5 117 139 IPR000048 GO:0005515
Lja3g0143 438 Gene3D - 116 168 - -
Lja3g0143 438 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
Lja3g0143 438 Pfam Protein of unknown function (DUF4005) 338 396 IPR025064 -
Lja3g0143 438 PANTHER IQ-DOMAIN 11 5 423 - -
Lja3g0143 438 MobiDBLite consensus disorder prediction 286 409 - -
Lja3g0143 438 MobiDBLite consensus disorder prediction 286 313 - -
Lja3g0143 438 MobiDBLite consensus disorder prediction 41 72 - -
Lja3g0143 438 MobiDBLite consensus disorder prediction 337 351 - -
Lja3g0143 438 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Lja3g0143 438 PANTHER IQ-DOMAIN 5-RELATED 5 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0143 Lja-Chr3 1499739 1502998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0143 1 438 IQD Protein Family AT5G13460 45.243 4.27e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0143 - - gmx:100800192 642.114