Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0126 ATGGGTCGGGGTAAGATTGAAATCAAGAAAATAGAGAATGCTAATAGCAGGCAAGTCACATTCTCCAAGAGGAGAACTGGGTTGCTCAAGAAGGCAAAGGAGCTAGCCATTCTCTGTGATGCTGAGGTTGCTGTTATCATCTTCTCCAACACAGGCAAAATGTTTGAGTTTTCCAGTTCTGGTATGAAGCACACACTTTCAAGATACAACAAATGTAAGGATTCTTCAGAGGCAGAAGAAGATTCTAAGATGGTGGATATTCTTCAAGATGAAATTGCAAAGCTAGAAACGAAGCAATTACGGCTTCTGGGTAAGGACTTAACTGGATTGGGCTTAAAGGAACTGCAAAATCTAGAGCAGCAACTTAATGAAGGTTTATCGTCTGTAAAGGAGAGGAAGGAGGAATTGCTTATGGAGCAACTGGAACAGTCAAGAGTTCAGGAGCAGAGAGCCATGCTGGAGAATGAAACTTTACGGAGACAGGTTGAGGAGCTTCGTTGTTTGTTTCCATTAACAGAGCATATAGTCCCAACTTATCTTCAGTATCACCATATGGAAAGAAAGAATGCCTTTGTAGATAATGGTGCTAAAAGTTCTAGCTTATTCAGTATCTGTGCAAATGAGAAAGGGGATTCAGACACCACATTGCATTTAGGGTTGCCGACTGATGTTCATCGCAAGAGGAAGGCACCTGAGAAAGATACCTTTTCTAATGATTCATAG 723 0.4136 MGRGKIEIKKIENANSRQVTFSKRRTGLLKKAKELAILCDAEVAVIIFSNTGKMFEFSSSGMKHTLSRYNKCKDSSEAEEDSKMVDILQDEIAKLETKQLRLLGKDLTGLGLKELQNLEQQLNEGLSSVKERKEELLMEQLEQSRVQEQRAMLENETLRRQVEELRCLFPLTEHIVPTYLQYHHMERKNAFVDNGAKSSSLFSICANEKGDSDTTLHLGLPTDVHRKRKAPEKDTFSNDS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0126 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 Coils Coil 141 168 - -
Lja3g0126 240 MobiDBLite consensus disorder prediction 220 240 - -
Lja3g0126 240 Pfam K-box region 75 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g0126 240 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lja3g0126 240 PANTHER MADS BOX PROTEIN 1 224 - -
Lja3g0126 240 Coils Coil 112 135 - -
Lja3g0126 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 MobiDBLite consensus disorder prediction 213 240 - -
Lja3g0126 240 ProSiteProfiles K-box domain profile. 78 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja3g0126 240 Coils Coil 78 98 - -
Lja3g0126 240 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lja3g0126 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 224 - -
Lja3g0126 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja3g0126 240 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0126 Lja-Chr3 1325090 1328684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0126 1 240 MADS-box Gene Family AT5G13790 56.911 6.55e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja3g0126 K-box 7.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0126 - - rcu:8259342 328.176