Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0123 ATGGGAAAAGCAAATAATTGTTCTATCCTTCTATCCTTCCTCCTCATTCCATCATTGTTTGTGATTGAAATTAGTGCAAACAAACAAGTCCAAGCTCTTAACAATCTTCACAAGTTGAAATTCAGAGGAGGTTCACAAATTGATAGGAGTGACTTTAAGGTACAACAGCTTGTTCATGATGATGCCTTTGTTCAATCACAGGAGGGTCTGAAAGAGAAAGATAGAATTGTTAGGCTTCCAGGACAGCCCCAAGTGAGTTTTTCTCAATATGGAGGGTATGTCACAGTGGACCAAGTGTCTGGTAGTGCCTTTTATTATTACTTTGTTGAAGCTCAAGGTTCCAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTAGGCTATGGAGCAATGCAAGAATTGGGACCTTTTAGAGTAAATAGTGATGGCAAAACATTATACAAAAACAGATATTCATGGAACAATGTTGCAAATGTATTGTTCCTGGAGTCACCAGCTGGAGTGGGGTTTTCTTATTCAAACAAATCATCAGATTATTTAGCCAATGGAGATAGAAAAACAGCTTCAAGTAACTATGTGTTTTTGGTAAATTGGTTGGAGAGATTTCCTGAATATAAAAACAGAGATTTCTATATTGCTGGGGAGAGCTATGCAGGGCGTTATGTTCCTGAACTTGCACATACTATTTTCAACCTTAACAAAATAGCAAACAAGACAATCATTAACTTCAAAGGAATCTTGATTGGGAATGCTGTGATCAATGATGAAACTGACGAGCCAGGAATGTATGATTATCTTGCTACCCATGCATTCATATCAGATAGGGCAGCGTATGATATCAACAACTCTTGTGATTTCACATCAAGTAATCAAACAAGGGAATGCAATGCAATTGCTGATGAAGTTTATCAGGATATTTCATACATTGATTTATATAACATTTATGCTCCACTTTGCAAAGATTCCAATCTCACAGCCCTTCCCAAGAAGACTTCTATTGTGACTGATCCATGTAGTGAGGATTATGTGTATGCATATCTTAATAGAGGAGATGTTCAAGAGGCTATCCATGCCAATGTCACCAAGCTTCAACATGATTGGGAAGCATGTAGTGATGTCATCAGAAAGTGGAATGATAGCCCTTCAACCGTTCTTCCAATTTTGCATGAACTCTTCAGTAATGGCCTTAGAGTTTGGATTTTCAGTGGTGACACTGATGGAAGGGTTCCTGTCACTTCAACCAAGTATTCCATTAAAAAGATGAACCTTCCCATTAAAAATGTTTGGCGCCCTTGGTTTGCCTATGGAGAGGTTGGTGGTTACACAGAAGTATACAAGGGAGACCTAACATTTGCTACAGTGAGAGAAGCAGGGCATCAAGTGCCAAGTTACCAACCAGCAAGAGCCCTTGTTTTGATCAAAAGTTTCTTAGATGGCACTCCTCTTCCAAGTCCCAAAAGAGATGCCTAG 1491 0.3917 MGKANNCSILLSFLLIPSLFVIEISANKQVQALNNLHKLKFRGGSQIDRSDFKVQQLVHDDAFVQSQEGLKEKDRIVRLPGQPQVSFSQYGGYVTVDQVSGSAFYYYFVEAQGSKETLPLLLWLNGGPGCSSLGYGAMQELGPFRVNSDGKTLYKNRYSWNNVANVLFLESPAGVGFSYSNKSSDYLANGDRKTASSNYVFLVNWLERFPEYKNRDFYIAGESYAGRYVPELAHTIFNLNKIANKTIINFKGILIGNAVINDETDEPGMYDYLATHAFISDRAAYDINNSCDFTSSNQTRECNAIADEVYQDISYIDLYNIYAPLCKDSNLTALPKKTSIVTDPCSEDYVYAYLNRGDVQEAIHANVTKLQHDWEACSDVIRKWNDSPSTVLPILHELFSNGLRVWIFSGDTDGRVPVTSTKYSIKKMNLPIKNVWRPWFAYGEVGGYTEVYKGDLTFATVREAGHQVPSYQPARALVLIKSFLDGTPLPSPKRDA* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0123 496 Gene3D - 391 486 - -
Lja3g0123 496 PANTHER CARBOXYPEPTIDASE 10 490 - -
Lja3g0123 496 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Lja3g0123 496 SUPERFAMILY alpha/beta-Hydrolases 68 491 IPR029058 -
Lja3g0123 496 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 490 IPR001563 GO:0004185|GO:0006508
Lja3g0123 496 Pfam Serine carboxypeptidase 80 486 IPR001563 GO:0004185|GO:0006508
Lja3g0123 496 Gene3D - 345 381 - -
Lja3g0123 496 Gene3D alpha/beta hydrolase 70 328 IPR029058 -
Lja3g0123 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Lja3g0123 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Lja3g0123 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Lja3g0123 496 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0123 Lja-Chr3 1307115 1314295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0123 353 489 Calmodulin-binding Proteins AT2G22960 31.387 1.12e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0123 K16297 - gmx:100804815 757.673