Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0099 ATGAAGAGATTGAGGTCAAGCGATGATTTGGATTCGTACGGTGGTGAGAAGAATGCATGCAAGGATTCGAATCTGAATCGGACCATCTCTTCTTCTTCCTCGCAGAGGAGCTTTTACTACAAGTCTGATGGTGTGCGGAAGGGTTTGTTGTCTTCCTCCTCGTCGTCTTCGTCGCGATATGATAGGGATCGGGCGGTGGAGGAGGATCGGGAGGGGTCGAGGATGGTTCGGAAGAGATCGGAGCATGATTTTGATGGTTTTGATCGGAGGAAGGGGTTCGATCGGTATAGGGATGGTGGTTATGGGAGCGGTGGTGGAGGTGGAAGTGGAAGTGGAGGAGGAGGAGGGGATAGGAGTTTGATTCACCGTTCGGAGAGTTTCTGTGGTCGGAGGGAGTTTCCCAAGGGGTTTCGGTCGGAGAGGGACCGGCCGAGAAGGGAGGGTAGCGTGTCGTCGTGGCGGAGGGGGTTGAAGGATTTTGATGAGAGCGGTGCGAGAGGGAGTGGGAGGGTTGGAGTGGCGGAGGAGAGAGCGGTGCGGTCGCCCAAGGGTTTGAGGGATGCTGTGAAGTCTCCAACGTGGTCGAGGGATTCTGAGAGTGAGCAATCTAAGAAGAGGTATTCTTCTTCTCCCAGAGGAGGAGGAGGAGGAGGGTTGAGAGATGGTGGTGCTGCAAAGTCAAAGTCAAAGTCACCCAGTTGGTCTAAGGATTCGGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAGACTGAGGAGGAGGTGAAGAAGACTGAGGAGGAGGTGCAGGTTCAGAGTGGAAACAGCAGTAGTGAAATGGAAGAGGGGGAGCTTGAACCTGAACCTGTACCACCCCAAACTGAACCTGTTCAACCCGAATCGGCTCCGGAAGATGCCACTGGAAGTGAAGTCCAGGATTCTGTACCAATGGAAACTGATGAGAAGCAAGTTCAGGAGAATGAATGCCACCCTAATGACAGAAACACTGGTATGGATGAAAGACAGGAGCTACCTAGTGAGGAAGAGGTAAAACCTAATGAGGGCATTGATTCTGAGGTGAAAAATGCAGAAAAAGGAGCTGATGAGCAGCCAGATATTCAGAATGATCCATCCAAGGAAATGCTTGTGACTGGGACTGAACTTGACAACGATGGTAATGAGGCTGAGAAGAAAGACGTGTGTTTGAATGCCGATGTTGCTCAGTGCAAGGAGGATGCAGGGAAGGGTTCAGAGACGGAGAAGATATTGGTTAATGAAGAGGAGCACAAGCAGGACAAGGGTGCAGATCTAGCAACCAGCACTGGTGTTGACAAACCTGAGTTAAATGATGAAGTCACAAAAGAAAATGAAGTTCCCAAGGAAGTGAACAGAGGAGTGGTGATGGAGAGTGTGACCAACAGCAATGCAAAGGATAAAGGCAAAAGAGTCTCCGCTGCACCTGCTGTTGATGCTCATTCTTTAGAAGATGGCTTGTGGATTGATAGAGGATCAAGAGATATCGCAACGTGTTCTGTTGATGTCATGGAAGGGCCAAGCACAAGAGGATTCGAGTTGTTTTCTAGGTCTCCTGTAAGAAAAGAGAAACCAGACCTGTCAGTTCTAAACAAGCAGAAGGATGACAGTCTTGCAATGGGGCAGCTTGATCTCACTCTTAGCTTGCCAAATGTTCTGCTACCTATAGGTGCTCCTGAGACAACAACACAAGGCCCTGGATCCCCCAGTCAAGCACGGAGCGTGCAGTCTTTGAGTAATACATTTTGCACTAACTCAGATGGTTTTACTGCATCAATGTCATTTTCAGGTTCCCAATCACTCTATCACAATCCAAGCTGTTCCCTAACGAAAAATAATTCAGTGGACTACGAACAATCTGTTGGCAGTCGCCCCTTATTTTCTCAAGGATTTTGGCAAGCCCAGGCTCAGAGTGATACCAAACAGAAAGAAGTTCCTCTTGGCCAGAGAGCTTCAGTGAATGGGAATGGCTCTTTTTACCAGCCTCAAGCATCATGGAGCGTTTTAGAGGGTCAAGTTGTGAAAGGTCAACATTTAATGGTTTTAGAAGGAAGCACAAAAATGAGTGGTGGAATTGATAGGCAATTGAGTTTTCATAAGCAGCTTACAGGACAGTCAAGGCGCCATGATGATGTTAGATCTCCTTCACAGAGTGTTGGGTCTCATGACATCGGATCAAATTATAGTTATGAGAAAAAGAGGGAGGTTAGGGACAGGGGTAGTGGTAGTCTGTATCGAACTACCAGCCTTAAGCAAAAAGAACAACTTTTGATAGGTGGAAGTGATTTTGTTGAGACAATCATTGCAAAAATAGTTTCTGAACCTGTACATGCTTTGTCTAGAAAGTTTCATGAGATGAACGGACAGTCCATAGCAGGTCTGAAAGAGGGTATTCGTGAAATCATGCTCAATACAGATAAACGTGGGCAAATACTTGCTTTTCAGAAAGTCTTGCAGAACAGGTCTGATATAACTTTGGATGACCTACTCAAGTGCCACCGAGTGCAACTTGAAATTTTGGTTGCTTTAAAAACAGGGTTAACCCAATTTCTTCAACTAGATGACAGCATTTCTTCTTCTGATTTAGCTCAAGTTTTTGTAAACCTGAGATGTAGAAATCTTTCATGTCGAAGTCAGTTGCCTGTGGATGAATGTGATTGTAAGGTTTGTGTGCAGAAGAATGGGTTTTGCAGGGAATGCATGTGTCTTGTGTGCTCTAAATTTGACAACGCATCAAATACATGTAGTTGGGTCGGGTGTGATGTTTGCCTTCATTGGTGCCATACTGATTGTGGATTACGAGAATCGTATATTAGAAATGGGCATAGTACTACTGGAACAAAAGGGATGACTGAGATGCAGTTTCATTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTCGCAAAAGATTGGTCTGCTGAAACTCTTTGCAAGGAGCTTGAATATGTGAAGAGAATTTTTGCTGCCAGCAAGGACATTAGAGGGAGACAATTGCATGAGATTGCAGATCAAATGCTGACAAGGCTGGTGATTAAGTCTAGCCTTCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCTGATTCTGATTCTTCTAAATTAGCCATGACAACAAGCTTTTCTGGGAAGGAGCATGTTACAGAGAACAATGGGATAGCTGGGCCGAGCCAGGAAGTTTCGTGGCGGAAATCTATTTACGCAGAAAAGCCACCTCTTTTAGAAAGGCCTGCAAACATCCTTCCTAGCTTTGATCAGAATGATAAAAGGTCTCTGGCGCAAGAGTTCCAGATGAGTATCGTCCAAAAGGACTTCCAGTTTGATGAATTGGAGAGCATAGTGAAAATCAAACAGGCAGAGGCTAAAATGTTTCAGTCTCGCTCTGATGATGCTAGAAGAGAAGCTGAAGGGTTAAAACGCATTTCCCTTGCAAAGAGTGAGAAAATTGAAGAAGAGTACAACAACCGACTTGCCAAGTTGCGGTTGGTCGAGACTGATGAAATGCGTAAACAGAAAGTTGAAGAGCTCCAAGCATTAGAGAGGGCACACTTGGAGTATTTGCACATGAAAAATAGGATGGAATCAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAAATGAGCCTTGCCATGTGA 3681 0.455 MKRLRSSDDLDSYGGEKNACKDSNLNRTISSSSSQRSFYYKSDGVRKGLLSSSSSSSSRYDRDRAVEEDREGSRMVRKRSEHDFDGFDRRKGFDRYRDGGYGSGGGGGSGSGGGGGDRSLIHRSESFCGRREFPKGFRSERDRPRREGSVSSWRRGLKDFDESGARGSGRVGVAEERAVRSPKGLRDAVKSPTWSRDSESEQSKKRYSSSPRGGGGGGLRDGGAAKSKSKSPSWSKDSESEQSKSVEVKKTEEEVKKTEEEVQVQSGNSSSEMEEGELEPEPVPPQTEPVQPESAPEDATGSEVQDSVPMETDEKQVQENECHPNDRNTGMDERQELPSEEEVKPNEGIDSEVKNAEKGADEQPDIQNDPSKEMLVTGTELDNDGNEAEKKDVCLNADVAQCKEDAGKGSETEKILVNEEEHKQDKGADLATSTGVDKPELNDEVTKENEVPKEVNRGVVMESVTNSNAKDKGKRVSAAPAVDAHSLEDGLWIDRGSRDIATCSVDVMEGPSTRGFELFSRSPVRKEKPDLSVLNKQKDDSLAMGQLDLTLSLPNVLLPIGAPETTTQGPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSLYHNPSCSLTKNNSVDYEQSVGSRPLFSQGFWQAQAQSDTKQKEVPLGQRASVNGNGSFYQPQASWSVLEGQVVKGQHLMVLEGSTKMSGGIDRQLSFHKQLTGQSRRHDDVRSPSQSVGSHDIGSNYSYEKKREVRDRGSGSLYRTTSLKQKEQLLIGGSDFVETIIAKIVSEPVHALSRKFHEMNGQSIAGLKEGIREIMLNTDKRGQILAFQKVLQNRSDITLDDLLKCHRVQLEILVALKTGLTQFLQLDDSISSSDLAQVFVNLRCRNLSCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSTTGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKDWSAETLCKELEYVKRIFAASKDIRGRQLHEIADQMLTRLVIKSSLPEVLRHIMSFLSDSDSSKLAMTTSFSGKEHVTENNGIAGPSQEVSWRKSIYAEKPPLLERPANILPSFDQNDKRSLAQEFQMSIVQKDFQFDELESIVKIKQAEAKMFQSRSDDARREAEGLKRISLAKSEKIEEEYNNRLAKLRLVETDEMRKQKVEELQALERAHLEYLHMKNRMESDIKDLLSKMEATKMSLAM* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0099 1226 Coils Coil 1175 1195 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 405 428 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 1 387 - -
Lja3g0099 1226 Pfam Coiled-coil region of Oberon 1099 1214 IPR032535 -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 440 455 - -
Lja3g0099 1226 Coils Coil 241 268 - -
Lja3g0099 1226 Pfam PHD - plant homeodomain finger protein 875 998 IPR032881 -
Lja3g0099 1226 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1225 IPR004082 -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 707 733 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 1 16 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 19 40 - -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 840 855 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1160 1182 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 825 840 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 866 887 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1121 1141 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 985 1004 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 912 932 IPR004082 -
Lja3g0099 1226 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 786 808 IPR004082 -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 232 261 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 60 97 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 405 478 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 176 206 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 308 368 - -
Lja3g0099 1226 MobiDBLite consensus disorder prediction 123 165 - -
Lja3g0099 1226 CDD PHD_OBE1_like 905 964 - -
Lja3g0099 1226 PANTHER PROTEIN OBERON 4 1 1225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0099 Lja-Chr3 1059615 1064729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0099 875 1023 PHD Gene Family AT5G57380 26.846 1.08e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0099 - - gmx:100817003 1573.53