Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0097 ATGGAGGAAGTTCAAGACGACTCTCAAACCCAATCATCAACCGGTCAAGAAAATGGGGATGATGAAGTGATCACTGAAACTTCTGCTTTTGTTAAAGGGGAACCCTCACAACAACTAGAATTGAGTAGCCCCCCAAAAGTTGATTCTGAACTTGTGGTTCTTCATGACAAGGTCACCAAACAACTCATTAAGGAAGGCCATGGTCAGAAGCCTTCTAAGTATTCAACTTGCTTCATTCATTACAGGGCGTGGTCTGAGAGCGCGCAGCACAAGTTTGAAGACACATGGCTGGAGCAACGACCGACTGAGATGATATTAGGAAAAGAGAAGAAAGAAATGACTGGCTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGGGCGTTGCTGCGTGTGGGCTGGGAATTAGGATATGGAAAAGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATATAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGAAAAGCTCGCAGTGATATGACTGTAGAGGAAAGGATTGGTGCAGCAGATCGGAGAAAGATGGATGGAAATGCTCTGTTTCAGGAAAATAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCTTATATGGGAGATGATTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCTGTAAAGAATCCATGCCACCTTAACATGGCCGCCTGTTTTATTAAGCTGAATCGCTATGAAGAAGCTATAGGACACTGCAGCATTGTTCTAGGTGAGGACGAGAACAATGTGAAAGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTATCTAAAAGCGCGAAAGTATGCCCCTGAAGATAAAGCAATTGCAAGAGAATTAAGGTTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATCTATAAAGGAATATTTGGACCAAGGCCTCAACCAGTACCTAAGAGAAAGAATTGGCTCATACTTATTTGGCAGTGGTTTCTATCACTATTCTATGGCCTTATCACACTCTTCAAACGTGAAAGATACAAATCTGATTAA 1122 0.4305 MEEVQDDSQTQSSTGQENGDDEVITETSAFVKGEPSQQLELSSPPKVDSELVVLHDKVTKQLIKEGHGQKPSKYSTCFIHYRAWSESAQHKFEDTWLEQRPTEMILGKEKKEMTGLGIGVASMKAGERALLRVGWELGYGKEGSFSFPNVPPMADIVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACFIKLNRYEEAIGHCSIVLGEDENNVKALFRRGKARAALGQTDAAREDYLKARKYAPEDKAIARELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKRKNWLILIWQWFLSLFYGLITLFKRERYKSD* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0097 373 Pfam Tetratricopeptide repeat 272 303 IPR019734 GO:0005515
Lja3g0097 373 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 70 163 IPR001179 GO:0003755
Lja3g0097 373 ProSiteProfiles TPR repeat profile. 271 304 IPR019734 GO:0005515
Lja3g0097 373 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 74 166 IPR001179 GO:0003755
Lja3g0097 373 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 42 334 - -
Lja3g0097 373 Gene3D - 42 167 IPR046357 GO:0003755
Lja3g0097 373 MobiDBLite consensus disorder prediction 7 23 - -
Lja3g0097 373 SUPERFAMILY FKBP-like 49 172 - -
Lja3g0097 373 Gene3D Tetratricopeptide repeat domain 168 299 IPR011990 GO:0005515
Lja3g0097 373 MobiDBLite consensus disorder prediction 1 46 - -
Lja3g0097 373 SMART tpr_5 237 270 IPR019734 GO:0005515
Lja3g0097 373 SMART tpr_5 186 219 IPR019734 GO:0005515
Lja3g0097 373 SMART tpr_5 271 304 IPR019734 GO:0005515
Lja3g0097 373 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP42-RELATED 42 334 - -
Lja3g0097 373 SUPERFAMILY TPR-like 178 328 IPR011990 GO:0005515
Lja3g0097 373 MobiDBLite consensus disorder prediction 30 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0097 32 334 Calmodulin-binding Proteins AT3G25230 30.284 8.49e-32 124