Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0087 ATGGAAGCGGCAGTGGTCGACGTCGGCTCCAAGCTCCTCAAAGCTGGTTTTGCTATCCCTGATCAGACTCCTCCCATGATAATTCCCACTCAGATGAAACGGCTGCTAGATGATGGGTCAGATTCATCACTTGATAGCTTCACTGTCGATCCTGTCGTGCGAGGGTTCGTCAGGGATTGGGACGCCATTGAGGATTTGCTGCACCATGTTTTGTACACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAAATACTGTTTACTGATCCACTCTGTACCCCAAAGGCCAACAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCTGGGTTTTATGCCTCAGAACAAGCTGTGTTGTCACTGTATGCGGTGGGACGTATTTCAGGATGCACTGTTGATATTGGCCACGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCCTCAAGAAGATTCGAGTTGGGAGGTATGGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCTCTAGTAAATATCAGCCTGTCTGATGTGGAGAAAATAAAAGAGCAATACTCATGCTGTGCTGAAGATGAATTAGCTTATCAGAAGACCGAACATTTTTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACTGTTGGTGAAGCTTTATTCCAGCCAAGTCTGTTGGGTTTAGATGCTCATGGCATTGTTGAGCAGCTTGTCCGAACTATTTCAACTGTATCATCTGATAATCATCGGCAGCTTCTAGAAAATACGGTGGTTTGTGGTGGCACTTCTTCTATGACAGGTTTTGAAGACAGATTTCAGAAGGAATCTAACTTAAGTTCATCCGCGGTTCAACCTACCCTTGTTAAGCCTCCAGAGTACATGCCAGAAAATTTAACCATGTATTCAGCATGGGTGGGAGGTGCCATACTTGCAAAAGTAGTTTTCCCTCAAAATCAGCATATAACTAAGGCAGACTATGATGAAACCGGACCTTCCATTGTTCATCGGAAATGCTTCTGA 1077 0.4401 MEAAVVDVGSKLLKAGFAIPDQTPPMIIPTQMKRLLDDGSDSSLDSFTVDPVVRGFVRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFELGGMDLTNFLAQELGKSNPLVNISLSDVEKIKEQYSCCAEDELAYQKTEHFCPVEKHTLPDGQVITIGRERYTVGEALFQPSLLGLDAHGIVEQLVRTISTVSSDNHRQLLENTVVCGGTSSMTGFEDRFQKESNLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0087 358 PANTHER BNACNNG31150D PROTEIN 1 357 - -
Lja3g0087 358 SMART actin_3 1 358 IPR004000 -
Lja3g0087 358 Gene3D - 5 352 - -
Lja3g0087 358 Pfam Actin 2 358 IPR004000 -
Lja3g0087 358 CDD NBD_sugar-kinase_HSP70_actin 4 163 - -
Lja3g0087 358 PRINTS Actin signature 122 141 IPR004000 -
Lja3g0087 358 PRINTS Actin signature 214 230 IPR004000 -
Lja3g0087 358 PRINTS Actin signature 42 64 IPR004000 -
Lja3g0087 358 PRINTS Actin signature 97 110 IPR004000 -
Lja3g0087 358 Gene3D - 120 321 - -
Lja3g0087 358 SUPERFAMILY Actin-like ATPase domain 128 358 IPR043129 -
Lja3g0087 358 Gene3D Actin; Chain A, domain 4 162 249 - -
Lja3g0087 358 SUPERFAMILY Actin-like ATPase domain 2 135 IPR043129 -
Lja3g0087 358 PANTHER ACTIN 1 357 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0087 Lja-Chr3 966372 970282 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0087 5 358 Cytoskeleton Gene Families AT3G18780 38.462 1.95e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0087 K16615 - gmx:100813266 669.463