Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0084 ATGGAGTCTGACCGGCCCCGCGGTGGCGAATCCGTTTTCAATGTCAGCGATAAGTTTCTCCGGATCGAGATCATGGCGGACACCGCCACCACCTTCTCTATCGCTGGCTGCAGCAAGAGGAGACCCAAAGAACAAATAGAAGGAGAAGGAAAAATATCAGCAGAGAACAAGCAGAAAGGAAGGTTCAAAAGAATATGTGTCTTTTGTGGTAGTAGAGTTGGATACAAGTCTGCATTTAGTGATGCAGCTCTTGTCCTTGGTGATTTTCTGGTTCAGAAGAGAATTGACTTGGTTTATGGAGGAGGAAGACTAGGACTAATGAGCTTGATCTCTCAAACTGTGCTAAAGGGAGGCTGCCATGTTCTTGGGGCAACAAGGAACAAACAAGCTGTGTTGTCACTGTATGTGGTGGGACGTATTTCAGGATGCACTGTTGATATTGCGCACGGAAAAATAGATATTGCACCAGTAATTGAGTGTGCTGTTCACCACATTGCCTCAAGAAGCTTCAAGTTGGGAGGTATGGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCACTAGTAAATATCAGCCTGTCTGATGTGGAGAAAATAAAAGAAAGACTGAACTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATACACTGTTGGTGAAGCCTTATTCCAGTCAAGTCTGTTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTCAGAACTAGTTCAACTGTATCATCTGATAATCACCGGCAGCTGCTAGAAAATACTGTGGTGTGTGGTGGCACTTCTTCTATGACAGGTTTTGAAGAGAGATTTCAGAAGGAATCTAACTTAAGTTCATCAACTGTTCAACCTACCCTTCCTCCAGAGTACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGTCATCCTTGCAAAAGTAGTTTTCCCTCAAAATGAGCATATAACTAGGCCGACTATGATGAAACCGGACCTTCAAATGCTTCTGACAGTATTCATCTGCACCATTTCAAGATATGTTTATTCCTCTGCATCTTCTATTTGTACTGTAAAATGCCCTCATCCTTGGTTTGATGTAGATTCTAGATAA 1143 0.4331 MESDRPRGGESVFNVSDKFLRIEIMADTATTFSIAGCSKRRPKEQIEGEGKISAENKQKGRFKRICVFCGSRVGYKSAFSDAALVLGDFLVQKRIDLVYGGGRLGLMSLISQTVLKGGCHVLGATRNKQAVLSLYVVGRISGCTVDIAHGKIDIAPVIECAVHHIASRSFKLGGMDLTNFLAQELGKSNPLVNISLSDVEKIKERLNCPVEKHTLPDGQVITIGRERYTVGEALFQSSLLGLEAHGIVEQLVRTSSTVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESNLSSSTVQPTLPPEYMPENLTMYSAWVGGVILAKVVFPQNEHITRPTMMKPDLQMLLTVFICTISRYVYSSASSICTVKCPHPWFDVDSR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0084 380 PANTHER BNACNNG31150D PROTEIN 121 335 - -
Lja3g0084 380 SUPERFAMILY MCP/YpsA-like 61 125 - -
Lja3g0084 380 SMART actin_3 63 344 IPR004000 -
Lja3g0084 380 Pfam Actin 201 326 IPR004000 -
Lja3g0084 380 PANTHER ACTIN 121 335 IPR004000 -
Lja3g0084 380 Gene3D - 61 130 - -
Lja3g0084 380 SUPERFAMILY Actin-like ATPase domain 138 335 IPR043129 -
Lja3g0084 380 Gene3D - 131 308 - -
Lja3g0084 380 Gene3D Actin; Chain A, domain 4 192 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0084 Lja-Chr3 931411 937938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0084 129 335 Cytoskeleton Gene Families AT1G49240 34.061 1.98e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0084 K16615 - gmx:100813266 352.443