Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0082 ATGATTTCCCATAACCAGACATGTTATGCCTTCCTTGCAGTTCCAGCTGCTTTGGTGATCTTCCTGGCTCTATGTCAAGGCACATCAGGGCTAACACAAGCTGAGACCCTCCTCAAATGGAAGCAAAGTCTCCCTCACCAACCAATTCTAGATTCATGGATGACAAACTCAACTTCAAATCAAAGTCCATGTTCATGGAAAGGTATCACTTGTGATTCTCATGGCAGAGTCACTATAATCAACTTGGCCTACACTGGACTTGAAGGTACCCTTCAACACTTGAACTTTTCTGTTTTCCCAGACCTTCTTCGCCTTGATCTCAAAGAAAACAGCCTCACTGGCCCCATACCACAAACCATTGGTGTGCTTTCAAAACTCCAATTCCTTGATCTTTCCACCAATTATTTCAATGGCACTTTGCCACTTTCTATTGCCAATTTGACCCAAGTTTATGAGCTTGATGTGTCAAGAAATGACATAACAGGAATACTAGACCCTCTCTTGTTTCCTGATGGTTCAGATAACCCCAAAACTGGCCTCATTGGTATCAAAAATCTTCTCTTCCAAGACACCCTCTTAGGTGGAAGGATCCCAAATGAAATAGGTAACATCAGAAACTTGACAGTGCTAGCTCTAGATGGAAACGGCTTCTTTGGTCCTATTCCTACCTCACTAGGAAACTGCACACATTTGAGCACTCTCAGAATGCCTGAGAACCAGCTTTCAGGTCCAATACCTCCAAGTATTGGCAAGTTAACCAACCTAACGGATGTGAGATTTATGTTCAACAACTTGAATGGCACTGTGCCACAAGAATTTGGAAACCTTTCCTCTCTGGTTGTGCTGCATCTTGCTGTGAACAACTTCATTGGTGAACTTCCACCACAAGTGTGTAAAAGTGGCAAGCTTGTGAATTTCAGTGCTGCAGACAACAGTTTCACTGGCCCAATTCCAGTGAGCCTTAGAAACTGTCCTTCATTGTACAGAGTTAGAATTGAAAACAACATGCTTACAGGCTATGCAGATAAGGATTTTGGAGTGTATCCTAACCTTACTTACATGGATTTCAGCAATAACATGGTGGAAGGTGAGCTCTCTTCAAAGTGGGGTTCCTGCAAAAACTTGCAATCACTGAAAATGGCTGGGAATTCAGTGAGTGGCAACATTCCTGGTGAGATTTTTAAGGAGGAACAACTAATTGAACTAGATTTGTCCTCCAACAAAATTTCAGGTGAGATTCCTCCAGAGATAGGAAATGCCTCAAACTTGAATGATTTAAATTTAGGAAACAACAAACTCTCTGGCATGGTACCTGTAGAAATTGGAAAACTTTCTAATTTGAGGTCTTTAGATTTATCCATGAACATGTTATTAGGACCAATCCCAAATCAGATAGGGGAGTTGTCCAACTTGAGAAGCTTAAATTTGAGCAACAATGAGTTGAATGGCACAATTCCTTACCAAGTTGGAAATTTTGCAGAATTACAAGAGTTTTTGGATTTGAGTGAGAACTCACTTTCAGGAGAAATTCCTTCCAGTTTTAGTAGGCTTTCAAGGTTGATAAGCTTAAACATCTCTCACAACAATTTGTCAGGTTCCATACCTGATTACCTCAGTGAAATGGTGAGTTTGTCCTCACTCAACCTTTCCTACAATCACTTGGAGGGCACTGTTCCTAAAAGTGGCATATTCAACTCTTCTCATAAGGTGGACTTGAGCAACAACAAAGGTTTATGCGGGAATGTCAGAGGTTTACAACCTTGTAAGGTTTCTCTCACTGATGGTGGAAGTGGAAGTAACAAAAATAAGGTTTGGATCCCCATTGTTGCTTCTCTAGGAGGTGTTGTTTTTCTCTCATTGGTGCTAGTTGGTGTTTTCTTCTTCTGCTACAAGAGAAAGTCAAGGGCTTCAGGACAAAAATCTTCACTAAAGAGACTAGATAATCCATTTTCAATATGGTACTTCAATGGCAGAGTTGTGTATGGAGACATCATGGAAGCTACCAAGAACTTTGACGACAAGTATTGCATTGGGGAAGGATCTCTTGGAAAAGTTTACAAAGCAGTGATGCAAGGAGGTCAAGTTTTTGCTGTGAAAAAGCTGAAATGTGATGAAGACAGCATAGACACTGAGAGTATAAAGACTTTTAAGAGTGAGATAGAAGCCATGACAGAAACAAGGCACAGAAACATTGTGAAGCTGTATGGATTTTGCTCTGAAGGGATACACACTTTTCTGGTTTATGAGTATATGGGAAGAGGGAACTTGTGTGATATGCTGAGAAATGATAAAGAAGCATTGGAACTAGATTGGCATAAGAGGGTTGATGTTGTGAAAGGTGTAGCAAATGCTTTGTCCTACATGCATCATGATTGTGTTCCACCCTTGATTCATAGAGACATATCAAGCAATAATGTTTTGTTATCCTTCGATCTTGAAGCTCATGTCTCAGATTTTGGCACTGCAAGGTTTCTGAAGCATGATTCACCTCTTTGGACATCATTTGCAGGCACATATGGCTATGCTGCTCCAGAGCTTGCATACACACTGGCAGTGACTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTGGCATTTGAGATTCTCACAGGAAAGCACCCTGGTGATCTTGTTTCATACATACAAACTTCGAGTGTTAAAAAGATAGACTTCAAAGAGATATTAGACCCTCGCGTCCCGGTCCCACTTCCTGCAAGGAGGAATGTTTTGAAGGAATTGGCATTGATTGCAAACTTAGCTCTATCTTGTTTACAAAACAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCAGTTGCTTGAAATGGAGAATGTAGATCACCCTTGA 2850 0.4102 MISHNQTCYAFLAVPAALVIFLALCQGTSGLTQAETLLKWKQSLPHQPILDSWMTNSTSNQSPCSWKGITCDSHGRVTIINLAYTGLEGTLQHLNFSVFPDLLRLDLKENSLTGPIPQTIGVLSKLQFLDLSTNYFNGTLPLSIANLTQVYELDVSRNDITGILDPLLFPDGSDNPKTGLIGIKNLLFQDTLLGGRIPNEIGNIRNLTVLALDGNGFFGPIPTSLGNCTHLSTLRMPENQLSGPIPPSIGKLTNLTDVRFMFNNLNGTVPQEFGNLSSLVVLHLAVNNFIGELPPQVCKSGKLVNFSAADNSFTGPIPVSLRNCPSLYRVRIENNMLTGYADKDFGVYPNLTYMDFSNNMVEGELSSKWGSCKNLQSLKMAGNSVSGNIPGEIFKEEQLIELDLSSNKISGEIPPEIGNASNLNDLNLGNNKLSGMVPVEIGKLSNLRSLDLSMNMLLGPIPNQIGELSNLRSLNLSNNELNGTIPYQVGNFAELQEFLDLSENSLSGEIPSSFSRLSRLISLNISHNNLSGSIPDYLSEMVSLSSLNLSYNHLEGTVPKSGIFNSSHKVDLSNNKGLCGNVRGLQPCKVSLTDGGSGSNKNKVWIPIVASLGGVVFLSLVLVGVFFFCYKRKSRASGQKSSLKRLDNPFSIWYFNGRVVYGDIMEATKNFDDKYCIGEGSLGKVYKAVMQGGQVFAVKKLKCDEDSIDTESIKTFKSEIEAMTETRHRNIVKLYGFCSEGIHTFLVYEYMGRGNLCDMLRNDKEALELDWHKRVDVVKGVANALSYMHHDCVPPLIHRDISSNNVLLSFDLEAHVSDFGTARFLKHDSPLWTSFAGTYGYAAPELAYTLAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSSVKKIDFKEILDPRVPVPLPARRNVLKELALIANLALSCLQNNPQSRPTMRSIAQLLEMENVDHP* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0082 949 Gene3D Transferase(Phosphotransferase) domain 1 751 948 - -
Lja3g0082 949 Gene3D Ribonuclease Inhibitor 178 288 IPR032675 -
Lja3g0082 949 Gene3D Ribonuclease Inhibitor 289 591 IPR032675 -
Lja3g0082 949 Pfam Leucine Rich Repeat 470 486 IPR001611 GO:0005515
Lja3g0082 949 PRINTS Leucine-rich repeat signature 399 412 - -
Lja3g0082 949 PRINTS Leucine-rich repeat signature 468 481 - -
Lja3g0082 949 SMART LRR_typ_2 276 300 IPR003591 -
Lja3g0082 949 SMART LRR_typ_2 397 420 IPR003591 -
Lja3g0082 949 SMART LRR_typ_2 541 566 IPR003591 -
Lja3g0082 949 SMART LRR_typ_2 147 171 IPR003591 -
Lja3g0082 949 SMART LRR_typ_2 468 492 IPR003591 -
Lja3g0082 949 SUPERFAMILY L domain-like 73 363 - -
Lja3g0082 949 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Lja3g0082 949 Pfam Protein kinase domain 674 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0082 949 SUPERFAMILY Protein kinase-like (PK-like) 647 946 IPR011009 -
Lja3g0082 949 Gene3D Ribonuclease Inhibitor 32 177 IPR032675 -
Lja3g0082 949 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 6 945 - -
Lja3g0082 949 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Lja3g0082 949 Pfam Leucine rich repeat 499 554 IPR001611 GO:0005515
Lja3g0082 949 SUPERFAMILY RNI-like 311 565 - -
Lja3g0082 949 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 945 - -
Lja3g0082 949 Gene3D Phosphorylase Kinase; domain 1 633 750 - -
Lja3g0082 949 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Lja3g0082 949 ProSiteProfiles Protein kinase domain profile. 671 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0082 Lja-Chr3 902620 906990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0082 28 844 Receptor kinase-like Gene Family AT4G08850 39.606 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja3g0082 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0082 - - aprc:113866080 1457.58