Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0079 ATGGCGTATCAATTAGGAGGTTCTTCTGGTGCTAACCGTAATGGTCTCGATGGAGAGATACGCACGACAAAGGAAAAGAGCTTCACATGTAAATTTTGCAAGCGAAAATTCTCTACCACACAAGCTTTGGGAGGACACCAGAACGCGCATAAAAAAGAGCGTTCCCTCGAAAAATTTCGTCAACAACTTGATGCTAGTTGTTTCAGGCTTTCGCACTTTCCTTCGTATTCGTCTTATCCAACTCTTCATACAGGTTTATACAACTCACATATGGATGACTCATTAAATCACAAGCTTTCTAATTCATGGACGACCTCAACTGGATTTCGATTCGATCAACACTCACCATATTTCAATGCGATGGGAAATATAAGAAGTCATCATGCAATTCCAAGGACTTATCTTAATGAAACACTTGCGCTTTTCCCAAATGTTACCCCTAATGTAGCAAGGCAAGTTATGAACACGACAAGCACTTCAAGGTTAGGGAATTGTGATGAAACTCTTGTGCTTTTTCCAAATCTTACCACCAATGTAGCAAGTCAAGTTATGAACACGACAAGCACTTCAAGGTTAGGGAATCGTGATGAAACTCTTGCGTTTTACCCAAATCTTACCACCAATGTAGCAAGTCAAGTTATGAACACGGCAAACACTTCAAGGTTAGGGAATCGTGATGAAACTCTTGCACTTTTCTCAAATCTTACCACCAATTTTGACGTGCCAACAACCAGGGCGAGGAATTTTCTCAATGATGTCAATATCGGATACTCTGGTTCCAACCTAAAAGAAGAAACTGATATTGATTTGTCACTTGGATACTCTCTTTTCAACATAAAAGAAGAAGCTTCTGACATAGATTTGTCACTCAGTATTGGTTACTCTGATTCCAAGATAAAAGAAGAAGCTTCTGACATAGATTTGTCACTTACGCTTGGTTTTAGTTCATGA 951 0.3943 MAYQLGGSSGANRNGLDGEIRTTKEKSFTCKFCKRKFSTTQALGGHQNAHKKERSLEKFRQQLDASCFRLSHFPSYSSYPTLHTGLYNSHMDDSLNHKLSNSWTTSTGFRFDQHSPYFNAMGNIRSHHAIPRTYLNETLALFPNVTPNVARQVMNTTSTSRLGNCDETLVLFPNLTTNVASQVMNTTSTSRLGNRDETLAFYPNLTTNVASQVMNTANTSRLGNRDETLALFSNLTTNFDVPTTRARNFLNDVNIGYSGSNLKEETDIDLSLGYSLFNIKEEASDIDLSLSIGYSDSKIKEEASDIDLSLTLGFSS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0079 316 PANTHER ZINC FINGER PROTEIN JAGGED 17 176 IPR045320 GO:0003700
Lja3g0079 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Lja3g0079 316 SUPERFAMILY beta-beta-alpha zinc fingers 23 56 IPR036236 -
Lja3g0079 316 Gene3D Classic Zinc Finger 15 71 - -
Lja3g0079 316 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 17 176 - -
Lja3g0079 316 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0079 Lja-Chr3 893491 894441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0079 22 100 C2H2 Transcription Factor Family AT5G25160 45.238 1.67e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0079 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0079 - - gmx:102668197 98.5969