Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0071 ATGAAGCGGAGACGGACGGTGGAAGATGATGACCCCCCTTCTAGTTCTAGGGTTTCTTCCCCTACGGCAGGCATCATCAAGAGACTTCGTTTGGAGAATTTCATGTGCCATTCCAACCACGAGACCGAGTTCGGAAAACACGTCAATTTCATCACCGGCCAGAATGGAAGTGGTAAGAGTGCGATCCTAACTGCATTGTGCGTTGCGTTTGGTTGTCGAGCGAAAGGGACTCAAAGGGCTGCAACTTTGAAGGATTTCATTAAAACTGGCGCTAGTAATGCAGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAGCCTGAAGTATATGGTGATGTTATCATTGTAGAACGGAGGATATCTGAATCCACAAGCTCCACTACGTTAAAAGATCGCCAAGGAAAGAAAGTTTGCAGTCGGAAAACAGATCTTCAAGAAATCGTTGAACATTTTAATATTGATGTGGAGAATCCGTGTGTAATCATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATGACAAAGACAAATTTAAGTTTTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTTTGGAAGGCATTTCCCGTGAAATAACTACTGCTCATGCAATAGTTCAAGACTTAGAGACTGCAATCAGGCCCATAGAGAAAGAGCTTAATGAGCTGCAGGTTAAAATTAAAGCTATGGAGCAGGTTGAAAAAATATCATTACGGGCTCAGCAGTTAAAAAAGAAACTTGCATGGTCGTGGGTTTATGATGTGGACAAGCAACTTGAGCAACAGAATGTAAAGATAGAAAAGTTGAAGAACCGGATACCTACCTGCCAAGCTAAGATTGATCAGCAACTGCATCGGATTGAAGAATTGAAGGAAAGGTGCTCTATGAAGAAAGCAGAAATTGCAAGTATGTTGGATACAACATCTCAAGTTAAGCAAATGAAGGAAAGTTTAAGGCAGTCTATGTCATTGGCAAGAAAAGAAAAATTAGAATGTGAGCGAGACTACAACAGCAAAAGGAGCAGCATACAGAAGTTGGAAGATCAACTCAAAAAATTTGAGGGACAAATGCATGATATTCAAGAGCAGCACGTAAAAAACACCCAGGCTGAAGTATCTAATATGGAGGAGAAAGTGAATAAACTTCGAGATGAGTTTCATGTTGCTGATTCAAATTTGAGAAGATTGAAAGAAGAAGAGGCTTTGCTAATGAACGAGATACAAATGCAAAATGAGGAAATTAAAAAGATTGTTAGTAAGATCCAAGATCATGGAAAGAAGGAACGTGCTAAATTGGATAATATTGGTGTTCTTCAACGTCAACAGAACAACACGATTACGGTTTTTGGAGGAGACAAAGTGATGCATCTATTACATATAATCGAGGATAATCATCGAAAGTTTAAGATGCCTCCGATTGGTCCAATTGGTGCCCATTTGAAGTTACTTCATGGTAAGCAATGGGCGGTTGCTATTGAATATGCCATCGGGAGATTGTTCAATTCTTTTATTGTGACTGATTATGATGATTTTCGTCTTCTGAAAAAATATGCAATGCAAGCAAGATATGGTGACCTGAGAATTATCATTTATGATTTTTCAACCCCAAGGCTTACAATACCACAGCATATGCTCCCTAATACAAAATATCCAACGGCTCTTTCTGTCTTACAATGCGAGAATCACACAGTGAATAATGTCTTAGTTGATCTGGGAAGTGTTGAGAGACAAGTGCTGGTTAACGATTATGAAACAGGGAAAGAAGTTGCCTTTGAACAAAGGATTCAGAATCTGAAAGAGGTCTATACAGCAAGTGGATCTAGAATGTTTTCTCGAGGCCCAGTACAGACTGTTCTTCCTGGAGGCAGGAAAAGAGGCCGTTTAAGTATTTCTTTTGAAGATGAGATTGCGAAACTTCGTAATGAAGCAGCAGATGAAGAAAAGGAAGCTAATGACTGCAGAAGGAATAAAAGAGTGGCAGAGGAGAAGCTTGAGGAGCTTCATAGTCGTATGAATTCTATAAAGAAGCGTTGTGCACATGCTGGACAAGATTTTACCTCTAAGAAACTAGCGTTGGAGATGGCAGAGCATGAGCATGCTGCTGAAAGGGGTTTAACATCTTCGTCCTCAGTTGATGAGATTGGTGAAGCAATTTCAGAAATCCAGAAAAAAAAAGACGAAGAACAAGTCTTGTTGAAAAATCTTCAGCAGAAGAAGCATGAAGCAGCAGGAAAAGCAGATGATCTCAAAACACAATTTGACAAACTGTGTGAATCAACGAATGGGGAAATTGCTGCCCTTGAGAAAGCTGAGACTGAACTTGTGGAGATTGAAAGAGACATGGATGCGGCGCAAGAGGAGAAGTATCATTATGATGGTGTCATGAAAAACAAGGTCCTACGTGATATTCAGGAGGCAGAGGAACACAATCTGGTGCTTACAAAGAGGCGCGAGGAATTTGTTGAAAAGGCTTCGATAATATGCTGTGTGAATGAACTGAATTCGTTAGGAGGTTGTGACGGGGATACCCCAGAGAAAATCAGTGCTCAACTAGAAGAAGTAAAACAGACACTTAGGCGTGAGAGCCCAAGGTACTCTGAATCAATTGATGACCTTAGGATGCTGTATGCGAAAAAAGAACGTAAGATTACTAAAAGGCAGCAAGTTTATAAAGCCCTTCGACAGAAATTGGACGCTTGCGAGAGAGCACTGAAGGTGCGAAGGAACAAGTTTCAGACAAATGCATCATGTGTGAAGCGCCAACTTTCTTGGAAATTTAATACCCATTTAAGAAGGAAGGGGATCAGTGGGCTTATCAGAGTTAATTATGAGAAGGAAACCTTGTTGATTGAGGTACAAATGCCCCAAGATGCATCAAACAAAGCTGTTCAAGACACTAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACATTGTGCTTTGCATTAGCCCTTCATGAAATGACCGAGTCCCCTTTTAGAGCAATGGATGAGTTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGTGGAACAAGGATCACAGTGGATATGCATCACCCCGCATGATACTAGCTCGGTGAAGGCTGGGGACAGGGTAAAGAAGATGCAAATGGCAGCTCCACGTTCTTGA 3183 0.4097 MKRRRTVEDDDPPSSSRVSSPTAGIIKRLRLENFMCHSNHETEFGKHVNFITGQNGSGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGASNAVIHVEIQNEGEDAFKPEVYGDVIIVERRISESTSSTTLKDRQGKKVCSRKTDLQEIVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVNDLLEGISREITTAHAIVQDLETAIRPIEKELNELQVKIKAMEQVEKISLRAQQLKKKLAWSWVYDVDKQLEQQNVKIEKLKNRIPTCQAKIDQQLHRIEELKERCSMKKAEIASMLDTTSQVKQMKESLRQSMSLARKEKLECERDYNSKRSSIQKLEDQLKKFEGQMHDIQEQHVKNTQAEVSNMEEKVNKLRDEFHVADSNLRRLKEEEALLMNEIQMQNEEIKKIVSKIQDHGKKERAKLDNIGVLQRQQNNTITVFGGDKVMHLLHIIEDNHRKFKMPPIGPIGAHLKLLHGKQWAVAIEYAIGRLFNSFIVTDYDDFRLLKKYAMQARYGDLRIIIYDFSTPRLTIPQHMLPNTKYPTALSVLQCENHTVNNVLVDLGSVERQVLVNDYETGKEVAFEQRIQNLKEVYTASGSRMFSRGPVQTVLPGGRKRGRLSISFEDEIAKLRNEAADEEKEANDCRRNKRVAEEKLEELHSRMNSIKKRCAHAGQDFTSKKLALEMAEHEHAAERGLTSSSSVDEIGEAISEIQKKKDEEQVLLKNLQQKKHEAAGKADDLKTQFDKLCESTNGEIAALEKAETELVEIERDMDAAQEEKYHYDGVMKNKVLRDIQEAEEHNLVLTKRREEFVEKASIICCVNELNSLGGCDGDTPEKISAQLEEVKQTLRRESPRYSESIDDLRMLYAKKERKITKRQQVYKALRQKLDACERALKVRRNKFQTNASCVKRQLSWKFNTHLRRKGISGLIRVNYEKETLLIEVQMPQDASNKAVQDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWICITPHDTSSVKAGDRVKKMQMAAPRS* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0071 1060 Coils Coil 259 314 - -
Lja3g0071 1060 Gene3D - 722 1057 IPR027417 -
Lja3g0071 1060 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 22 1060 - -
Lja3g0071 1060 Pfam AAA domain 28 284 IPR038729 GO:0140664
Lja3g0071 1060 Coils Coil 725 759 - -
Lja3g0071 1060 CDD ABC_SMC6_euk 26 180 - -
Lja3g0071 1060 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 22 1060 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lja3g0071 1060 Gene3D - 25 224 IPR027417 -
Lja3g0071 1060 SUPERFAMILY Smc hinge domain 462 649 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lja3g0071 1060 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g0071 1060 Coils Coil 774 794 - -
Lja3g0071 1060 Coils Coil 897 917 - -
Lja3g0071 1060 Coils Coil 336 420 - -
Lja3g0071 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 1053 IPR027417 -
Lja3g0071 1060 Coils Coil 636 684 - -
Lja3g0071 1060 CDD ABC_SMC6_euk 964 1060 - -
Lja3g0071 1060 Coils Coil 213 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0071 Lja-Chr3 803086 833781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0071 11 1060 Structural Maintenance of Chromosomes family AT5G07660 55.724 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0071 K22804 - gmx:100816916 1480.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0071 3 803086 833781 Lja3g0071 3 803086 833781 ECH