Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0070 ATGCACTTATCCACAAATAAAGAGAGAGAAAGTATTCAGACTAGTGGGGGCTCTGCAACAATGGAGAAGAACAACAGTAGGGACTGCGGGATCTGCGGTAAGAACTTCTCCAGTAGCAGAGCCATGGGAGGTCACATGAGATCTCACTTTGCCAAATTGCCAATTCCTCCAAAGCCTGAAACTGAGAATCAAGCACTAGACCACTCAGCTGAGTTAACCCAGTGCGCAATTCAATCTGCTCCCTCACTGGCTTGCCATCCCCAAAAGAAACCAACACAGGATTTCCAATCTCCGGAAGGCGACATTTTGGCCTTCTTGGCAAAGTCAGGGATTTACCCTAAAAACCCAACCGGCAAAAGATCCAAATGCCGCCGCAGAGAAGCCGGACCAAAACAATTGTGTTCAATAACTGAAAGGCTTCAGGCAGAACAAGCGGCCAGGACTATAATGATGATGTCCAGGGATAAATGGGCAGAAAGCAAGGAAGCTAGCAAAATGGAGGCAGAAGACAGTGAAAATGGCAGAGATGACTCCCTCATTCAAACTCCTAAAGCCAGGTTCAAGTGTGGGAGGTGCGGGAAAATATTTCGATCTCATCAAGCTCTTGGTGGGCACAGATCAAACCACAAGAAAAACAAGAATCAAAGCCAAAGAGGCCGTGAATCTCAAGATGACCAAAGTGACGACAATGGTGATGTAGGCAACAAATTGTTCGAGTGCCCATCCTGCTTCAGATTGTTCAAGACTGCTCAAGCACTCGGAAAACATAAGAAGGTTCACTTCTCAAATGCTATGGTTGCTGATGCTCATACTGGTTCTACTTCTAATGAATCTGGAGGTATGTTGGAATTCAATTTAGATCTTAACTTTCCAGCTCAGGGAGAAGATGCAGTGGCTAGCCACAATGAATTTTTAGGTGACCAGTGA 927 0.4563 MHLSTNKERESIQTSGGSATMEKNNSRDCGICGKNFSSSRAMGGHMRSHFAKLPIPPKPETENQALDHSAELTQCAIQSAPSLACHPQKKPTQDFQSPEGDILAFLAKSGIYPKNPTGKRSKCRRREAGPKQLCSITERLQAEQAARTIMMMSRDKWAESKEASKMEAEDSENGRDDSLIQTPKARFKCGRCGKIFRSHQALGGHRSNHKKNKNQSQRGRESQDDQSDDNGDVGNKLFECPSCFRLFKTAQALGKHKKVHFSNAMVADAHTGSTSNESGGMLEFNLDLNFPAQGEDAVASHNEFLGDQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0070 308 MobiDBLite consensus disorder prediction 155 180 - -
Lja3g0070 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Lja3g0070 308 SMART c2h2final6 238 260 IPR013087 -
Lja3g0070 308 SMART c2h2final6 187 209 IPR013087 -
Lja3g0070 308 SMART c2h2final6 27 49 IPR013087 -
Lja3g0070 308 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Lja3g0070 308 MobiDBLite consensus disorder prediction 49 68 - -
Lja3g0070 308 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Lja3g0070 308 MobiDBLite consensus disorder prediction 200 232 - -
Lja3g0070 308 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 21 296 - -
Lja3g0070 308 MobiDBLite consensus disorder prediction 1 28 - -
Lja3g0070 308 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 21 296 IPR044303 GO:0006355
Lja3g0070 308 SUPERFAMILY beta-beta-alpha zinc fingers 234 263 IPR036236 -
Lja3g0070 308 MobiDBLite consensus disorder prediction 214 232 - -
Lja3g0070 308 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lja3g0070 308 Gene3D Classic Zinc Finger 184 260 - -
Lja3g0070 308 Pfam C2H2-type zinc finger 29 49 - -
Lja3g0070 308 Pfam C2H2-type zinc finger 238 260 - -
Lja3g0070 308 Pfam C2H2-type zinc finger 186 211 - -
Lja3g0070 308 SUPERFAMILY beta-beta-alpha zinc fingers 29 209 IPR036236 -
Lja3g0070 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Lja3g0070 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Lja3g0070 308 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0070 Lja-Chr3 791129 792129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0070 26 296 C2H2 Transcription Factor Family AT3G60580 30.952 5.56e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0070 zf-C2H2_6 6.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0070 - - cam:101511854 242.276