Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0063 ATGGAAGCCGTCGATTCCAATCCTCCCTACGATCTAACGCCGCAAAACGCCAACGGAATCCCATCGGAGAACGGCCAGGCCGCCGCTGACAACGGTTCACAACCGCAGATTTCGAAGCCTTTGGTTTCCGACAACGGATTAACCGGCAACACCCGCAGCGGCACCGACAAGGACCAATCCGGCGGCGAGGAGGAGACCACCAGCAGGCGCCGCCGACGTAGCCGCTGGGACCCGCAGCCGGACTCCAACGAGCAGGCCGGCGGCGATTCGGGACCCAAGAAGAGGAAGTCGCGGTGGGCGGATGATGATCCGAAGCCGTTGATTCAGCTACCTGATTTCATGGGAGGTATTGAATTCGATCCTGAGATTCAAGCTCTGAATAGCAGGCTTCTTGAGATTAGTCGAATGTTGCAGTCCGGTTTGCCTTTGGATGATCGTCCTGAAGGTGCTCGATCTCCTTCGCCTGAACCTATATATGATAACATGGGAATTAGGATCAATACGAGAGAGTATCGTGCTCGTGAGAGGTTGCAGAAAGAGAGGCAAGAAATTATATCGCAAATCATCAAGAAAAACCCTGCGTTTAAGCCACCTGCAGATTATAGGCCACCCAAGCTTCAGAAGAAGCTTTATATTCCAATGAAGGAGTACCCTGGTTACAATTTCATAGGACTTATCATTGGCCCTAGAGGTAACACCCAGAAGCGGATGGAGAAAGAGACGGGTGCTAAGATTGTGATTCGGGGTAAAGGGTCTGTGAAAGAAGGGAGATTGCAGCAGAAGAGGGATTTGAAACCTGATCCTTCTGAGAATGAGGATTTGCATGTTTTGGTGGAGGCAGAGACGCCGGATGCGCTTGAGGCGGCTGCAGGCATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCACAAGAGGCAGCAGCTTAGGGAGCTTGCTGCTTTGAATGGGACCATTAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCAGGACATCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCTAGCATAGATTGTCCGGTCAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTTTTAGCAGAGTTGGGAGGTACGGTTCCAGAATCCGCAACTAAGCAAACCAGTACACTGGCAATTGGTTCGGGCAATTCCGGAAGCAACCCTCCTTGGGCCAACAACAATGGTGGCTCCACTGGTGGTGCAGCACAAGCTGGATTAGGGGCTGGTGCAGTTAAGAAGGAAATCGATGATACAAATTTGTACATTGGGTATTTGCCACCAACTCTTGAGGATGATGGCCTGATCCAATTGTTTCAACAGTTTGGTGAGATTGTTATGGCTAAAGTTATCAAGGATCGAATGACAGGGTTAAGTAAAGGATACGGGTTTGTGAAGTATGCTGATATAACGATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCTGTTCGAGTTGCAGGCAAGCCTCCTCAGCCTGTTGTACCTCCTGGACCACCAGCGTCTGGTATGCCCACTTACCCTGTTCCGAGCCAGCCACATGGTGCGTATCCATCGCAGCAGCAATATGCCGCCGGCGGTCCCCTTGGGGTTGCTCCCCCGACAAACTATGGTGGCACCCCAGTCCCATGGGCTCCTCCCGTTCCTCCTCCATATGCCCCTTATGCACCTCCCCCACCTGGGTCGACTATGTATCCTCCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCATTATCCTCCTCCCCCTGGTGCCCCACCCCAGCCTGCAACTTCTAATGAGCAGCAAAGTTACCCTCCCGGAGTGCAGTCTGATAATAGTACCTCTACTCAGTCTATACCAGCCAGTATGTACGGGAACACAGTACCTTCAATGCCTCCACCACCTCAACCTACATATCCTCCATCATATGGATATCCACCTTACTACAATGCAGTTCCTCCACCACCCCCACCTGCACCTGTTACTTCAGAACAATCCCCCAGCTTTGGTAATGTGCCTTGGGCCAGCAATCCCATGGTGCCACCCCCTCCTTCAGATAATCAATCCCAGCCCAGGGCTACAAACCCACCTTTGCCTCCTGCTTCATCAGCTGGTGATTCCGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2238 0.5147 MEAVDSNPPYDLTPQNANGIPSENGQAAADNGSQPQISKPLVSDNGLTGNTRSGTDKDQSGGEEETTSRRRRRSRWDPQPDSNEQAGGDSGPKKRKSRWADDDPKPLIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWANNNGGSTGGAAQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASGMPTYPVPSQPHGAYPSQQQYAAGGPLGVAPPTNYGGTPVPWAPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVHYPPPPGAPPQPATSNEQQSYPPGVQSDNSTSTQSIPASMYGNTVPSMPPPPQPTYPPSYGYPPYYNAVPPPPPPAPVTSEQSPSFGNVPWASNPMVPPPPSDNQSQPRATNPPLPPASSAGDSEYEKFMAEMK* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0063 745 SUPERFAMILY Retrovirus zinc finger-like domains 324 370 IPR036875 GO:0003676|GO:0008270
Lja3g0063 745 MobiDBLite consensus disorder prediction 1 111 - -
Lja3g0063 745 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 24 745 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 523 540 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 9 56 - -
Lja3g0063 745 PANTHER RNA-BINDING PROTEIN RELATED 24 745 IPR045071 -
Lja3g0063 745 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 446 515 IPR000504 GO:0003723
Lja3g0063 745 ProSiteProfiles Zinc finger CCHC-type profile. 328 342 IPR001878 GO:0003676|GO:0008270
Lja3g0063 745 MobiDBLite consensus disorder prediction 57 79 - -
Lja3g0063 745 ProSiteProfiles Zinc finger CCHC-type profile. 354 368 IPR001878 GO:0003676|GO:0008270
Lja3g0063 745 SMART rrm1_1 445 518 IPR000504 GO:0003723
Lja3g0063 745 Gene3D K Homology domain, type 1 198 326 IPR036612 GO:0003723
Lja3g0063 745 MobiDBLite consensus disorder prediction 88 105 - -
Lja3g0063 745 Pfam KH domain 221 294 IPR004088 GO:0003723
Lja3g0063 745 Gene3D - 327 379 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 655 691 - -
Lja3g0063 745 SMART kh_6 206 298 IPR004087 GO:0003676
Lja3g0063 745 MobiDBLite consensus disorder prediction 522 567 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 596 623 - -
Lja3g0063 745 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 444 522 IPR000504 GO:0003723
Lja3g0063 745 MobiDBLite consensus disorder prediction 624 653 - -
Lja3g0063 745 ProSiteProfiles Type-1 KH domain profile. 221 293 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 596 745 - -
Lja3g0063 745 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 206 332 IPR036612 GO:0003723
Lja3g0063 745 PRINTS Proline rich extensin signature 600 616 - -
Lja3g0063 745 PRINTS Proline rich extensin signature 707 732 - -
Lja3g0063 745 PRINTS Proline rich extensin signature 581 593 - -
Lja3g0063 745 PRINTS Proline rich extensin signature 653 674 - -
Lja3g0063 745 PRINTS Proline rich extensin signature 675 691 - -
Lja3g0063 745 SUPERFAMILY RNA-binding domain, RBD 440 542 IPR035979 GO:0003676
Lja3g0063 745 Gene3D - 417 526 IPR012677 -
Lja3g0063 745 MobiDBLite consensus disorder prediction 251 272 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 396 424 - -
Lja3g0063 745 SMART c2hcfinal6 353 369 IPR001878 GO:0003676|GO:0008270
Lja3g0063 745 SMART c2hcfinal6 327 343 IPR001878 GO:0003676|GO:0008270
Lja3g0063 745 Pfam Splicing factor 1 helix-hairpin domain 95 202 IPR032570 -
Lja3g0063 745 MobiDBLite consensus disorder prediction 142 161 - -
Lja3g0063 745 MobiDBLite consensus disorder prediction 704 726 - -
Lja3g0063 745 CDD SF1_like-KH 207 323 - -
Lja3g0063 745 Gene3D - 120 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0063 Lja-Chr3 708250 712826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0063 444 576 Eukaryotic Initiation Factors Gene Family AT3G16380 32.143 1.53e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0063 K13095 - gmx:100800982 1103.97